Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04034 ATGAATCCCTACATTTTCGGCGTCATCCTCCCCGTTCTCGCCACTCTCCTCTTCCGCTCCAACCACCCCAAACGCCGCGGAGTTCCCACCGACACCACCGATCCCGGCGTAACCGTCAGAAACAAGCGCTTCGATTCGCCGGTGGAGACGGCATGGGAGGGAGTGAGCACGCTGGCGGAGCTGTTCGAGGAAGCGTGCAGGAAGTACGGGGAGGGACTGTTGCTAGGAACTCGGTTGCTTGTATCGAGGGAAATGGAAACGAGTAGCGACGGGAGACAGTTCGAGAAGGTTGAATTGGGAGGTTATGAGTGGCTCTCGTATGCGGAGGTGTTTGAAGCGGTTTCTAGCTTTGGGAGTGGATTGGCTGCGTTGGGACATGGGAGGGAACACCGTGCGGCTATTTTTGCTGATACAAGGGAAGAGTGGTTCATTGCTCTACAGGGTTGTTTCAGGCGAAATGTGACAGTTGTAACTATGTACGCATCATTGGGAGAGGAAGCTTTATGTCACTCCCTAAATGAGACAGAGGCTACAACAGTAATTTGTGGGAAGAAAGAATTGAAAACACTTGTAAATATTAGTGGACAACTTGACTCAGTGAAACGTTTGATATGCTTGGATGATGATATCCCATCTGATGCCTCATCTGTTGGACATGGCTGGACAATCATATCTTTTGCAGATGTTAAGAGACTTGGTAAAGAAAACCCTGTTGATGCTGATTTACCTCTCCCACCAGATGTTGCAGTTATTATGTATACAAGTGGAAGTACCGGATTACCTAAGGGTGTGATGATGACACATGGCAATGTTTTAGCTACCGTCTCTGCTGTGAAGACAATTGTTCCCAAACTTGGGAAAAAGGATATATATCTAGCATACTTGCCAATGGCTCATATCCTTGAACTAGCAGCAGAGAATTTAATGGCAGCTGTTGGGGCTGCTATAGGATATGGGTCTCCTTTGACCCTAACAGATACATCAAGCAAGATAAAGAAAGGAACAAAGGGAGATGCTACAGTGTTGATGCCAACTTTAATGGCGGCTGTACCTGCAATTCTTGACCGTGTTCGCGATGGAGTGTTCAAGAAGGTAAATGCAACAGGAGGATTACCTAAGAAGTTGTTTTATTTATCCTATGAGAGGAGGTTGCAAGCTATTAATGGGAGCTGGTTTGGAGCTTGGGGCTTGGAAAAGGTTCTCTGGAATTTTCTTGTGTTTAAAAAGGTCCGAGCAATTCTAGGCGGCCGTATCCGTTTTATACTGTCTGGTGGTGCTCCCCTTTCTGGTGATACTCAGCAGTTCATCAATATCTGCCTTGGTGCCCCAATAGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATTTTGATGATACATCTGTTGGCCGTGTCGGACCACCTCTTCCTTGCTCATACATTAAGCTTATCGACTGGCCTGAAGGTGGGTATTTGACTAATGACTCACCAATGCCCCGGGGTGAAATTGTAATCGGCGGTCCAAATGTCACTCTTGGGTACTTCAAGAATGAAGAAAAGACAAAAGAATCATACAAGGTTGATGAAAGAGGAATGAGATGGTTCTACACCGGTGACATAGGGAGGTTTCATCTAGATGGTTGTCTTGAGATCATTGATCGTAAAAAGGACATTGTTAAACTGCAGCATGGAGAGTATGTCTCTTTGGGAAAGGTTGAGGCAGCTCTTATTGTCAGCCCCTATGTGGACAATATTATGTTGCATGCTGATCCTTTCCATAGTTATTGTGTGGCACTTGTTGTGGCTTCTCAGTCCACATTGGAAGAATGGGCTTCAAAGGAAGGAATTCCTTATTCTGGCTTTTCAGAACTGTGCTCTAAAGAAGAAAGCTTGAAAGAGGTGCACGCGTCACTAGTGAAGGAGGCAAAGAAGGCTGGTTTGCAAAAACTTGAGATTCCTGCAAAATTAAAATTGCTTTCTGATCCATGGACACCTGAGTCTGGCCTAGTCACTGCTGCTCTCAAGCTCAAAAGAGAGGCCGTCAGAAAGACTTTTCAGGAAGAACTTCTCAAGTTATACTCTTCATAG 2082 0.4582 MNPYIFGVILPVLATLLFRSNHPKRRGVPTDTTDPGVTVRNKRFDSPVETAWEGVSTLAELFEEACRKYGEGLLLGTRLLVSREMETSSDGRQFEKVELGGYEWLSYAEVFEAVSSFGSGLAALGHGREHRAAIFADTREEWFIALQGCFRRNVTVVTMYASLGEEALCHSLNETEATTVICGKKELKTLVNISGQLDSVKRLICLDDDIPSDASSVGHGWTIISFADVKRLGKENPVDADLPLPPDVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVKTIVPKLGKKDIYLAYLPMAHILELAAENLMAAVGAAIGYGSPLTLTDTSSKIKKGTKGDATVLMPTLMAAVPAILDRVRDGVFKKVNATGGLPKKLFYLSYERRLQAINGSWFGAWGLEKVLWNFLVFKKVRAILGGRIRFILSGGAPLSGDTQQFINICLGAPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPLPCSYIKLIDWPEGGYLTNDSPMPRGEIVIGGPNVTLGYFKNEEKTKESYKVDERGMRWFYTGDIGRFHLDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMLHADPFHSYCVALVVASQSTLEEWASKEGIPYSGFSELCSKEESLKEVHASLVKEAKKAGLQKLEIPAKLKLLSDPWTPESGLVTAALKLKREAVRKTFQEELLKLYSS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04034 693 SUPERFAMILY Acetyl-CoA synthetase-like 54 691 - -
Vifa3g04034 693 ProSitePatterns Putative AMP-binding domain signature. 251 262 IPR020845 -
Vifa3g04034 693 Gene3D - 48 552 IPR042099 -
Vifa3g04034 693 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 41 691 - -
Vifa3g04034 693 Pfam AMP-binding enzyme 95 560 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04034 Vifa-Chr3 1189610972 1189617207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04034 146 692 Acyl Lipid Metabolism Gene Families AT1G77590 77.879 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04034 K01897 - gmx:100803677 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04034 3 1189610972 1189617207 Vifa3g04034 3 1189610972 1189617207 ECH