Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03947 ATGGATCAATCTCAGAACCAGCGATCACTAACAACACCACCACCACCGTCGCGTTCTGTTCAATTCCACCCTGCTCGAGTACCGATTCTCGATCTCTTCACTCTCTACTTAGGACTTGGAAGAAACAGCCGCAACAAACCCGACGACTCACTCCGCGAACCACCGAACAAAGCGCAAAAACGCGTGCATGCTATTAACAGAGAGCTTCCACCGCCAAATGAGCAATTCATTTTAGATTTTGAGCAACTTCAGAGCCAGTTTCCGGACCATGAGCAATTACGTTTCGTGGTTGAAGCTGTTCTTATACCATTGGTTGCACAGTGTAGTGGTCATGGATCGCGATCAGACTTTCTTATTTTTATTTTGCGAAGCTTGAGCGGTATTGGGTGCATTAACTGGGACACCTTTCTTCCGTCCCTTCTTTCTTCAGTTTCTTCGGCAGAATTACCGGTTGGTCAAATGAGTCAAGCAGTGTCAACAATTACCTCTTCTAGCTTATCACAGTCAGGAATGCTGCCTCCTCCAAATACAATTACTAATTCTTCTAATTTTCAGTCTTCAAATCCTGCATCTCCATTGAATTCTGTCCATACTATTGGCTCCCCTGCACAGCCATCGATTGAGCCGTCATCTGGTGCAGCTCTATCTCCTGTAAAATCATCTGATATTTCCTCGAGTCAATTACAATCTAAACTAAGAGGCGGACCGTCTGTTGAAAATAATGATATCAGTAACAGTAACCTTCGCCAGCTATGTTGCAAAATCATTTTAACTGGTCTGGAGTTCAGTTTAAAACCTGTGACATATGCCGGAATCTTCAACCATATGCTCAATTGGCTGGTGAATTGGGACCAGAGACAACATGGAGTTGATGAATCTGTTATTCTGAAGTCATGGAGACTTGACAAAACTGTAATTGCCTGGCTACATAGTTGCTTGGATGTGATCTGGCTTTTAGTTGATGAGGGAAAATGTCGGGTTCCCTTTTATGAATTATTACGTAGTGATTTTCAATTCATAGAAAATATACCTGATGATGAAGCATTATTTACACTTATCTTGGAGATCCACAGGAGACGAGACATGATGGCTCTGCACATGCAAATGTTAGACCAGCATCTTCATTGCCCTACATTTGGGACTCATCGGATCCTAAACCAGACCACACCTACTATTTCAAATTCAAACGAAGCAATAGCGCACCTGCGACTATCACCACTCTCATATTTAAGTGTACTTGGAGAACCATTGCAAGGAGAGGATATTACAACCTCTATTCAGAAGGGAAGTTTGGACTGGGAGAGAGCTGTACGTTGCATCAGGCATGCTCTCCGTACCACACCTTCACCTGATTGGTGGAGACGAGTACTGGTACTTGCTCCTTGCTACAGGCCTTCATCTCAAGGGATTACTGCTGGTGCTGTTTTTTCTTCAGAGATGATTTGTGAAGCAGTTATTGATAGAATTGTAGAACTATCCAAATTAACAAATTCAGAGATAAATTGCTGGCAGGACTGGCTTGTCTTCTCTGATATTTTCTATTTTCTTACGAAAAGTGGGTGCATTGATTTTATTGACTTTGTGGACAAGCTGGTGTCACGTCTTTCCGTGGGTGATCATCATATACTTAGGACAAATCACGTGACTTGGCTGCTTGCACAGATAATACGAATTGAGCTGGTCATGAATGCTTTGAATGCAGATTCTAGAAAGGTGGAAACAACCAGAAAGGTTTTATCATTTCATAGAGAAGACAGAAGTTCAGATCCTAGTAGTCCTCAAAGTGTCTTGCTTGATTTTGTAAGCAGCTGTCAAAATTTACGTATATGGTCATTAAACACAACAACCAGAGATTACCTGAATAATGAACAACTTCAAAAAGGAAAGCAAATAGATGAATGGTGGAGACAAGCAAGCAAAGGAGACCGAATGATGGATTATATGAACATGGATGAACGCTCAATAGGAATGTTTTGGGTTGTGACATACACAATGGCACAACCTGCTCTTGAAACAGTAATGAATTGGTTAACTTCTGCTGGAGTTATTGACTTGCTACCTACAACAAATCTACAACCAGCTGAGAGAATAGTTTGTACACGAGAAGTGAGCCCATTACCTATATCATTATTATCGGGGTTTTCACTGAACTTATGTTTGAAGCTGTCTTATCAAATGGAAGATTCTCTGTTTTCTGGGCAGATTATACCCAGCATTGCCATGGTTGAAACTTATACTAGATTGCTGCTTATTGCACCTCATTCGCTATTTCGTTCGCATTTCAATCATTTGGTGCAAAAAAATCCTTCTTTGTTGAGCAAGCCTGGTGTAACACTTTTGGTGCTTGAGATGTTGAACTACAGACTACTTCCACTTTACAGGTATCAGGGAAAAAGCAAAGCCTTGATGTACGACGTTACAAAGATAATTTCTGCTCTAAAAGGAAAACGGGGAGATCACCGTGTATTCAGATTAGCTGAAAATCTGTGCCTGAATCTGATATTCTCATTGAGAGATTTCTTTTTGGTTAAAAGGGAAGGAAAGGGCCCAACGGAATTTACTGAAACTTTGAACCGAGTGACGGTTATAACACTTTCTATACTTATTAAGACCCGCGGGATTGCCGATGCTGATCACCTGCTTTATCTCCAAAACATGTTGGATCAAATAATGGCAGTCAGTGTACATACATGGTCAGAAAAAACACTGCGATACTTCCCGTCTGTTATGCGTGAAGCATTGAGTGGTCGACCAGATAAAAGGAGCCTTGCAATCCAAACATGGCAGCAGGCAGAAACAACCGTTATAAACCAGTGCACCCAGCTTCTTTCACCTTCGGCAGATCCTAGTTATGTCATGACCTATATCAGCCATAGTTTCCCTCAGCATAGACAGTATTTGTGTGCTGGTGCATTGATATTAATGCATGGCCATGCAGAAAACATTAACAGTGGAAACCTGGGACGCGTACTGCGGGAATTTTCTCCTGAAGAAGTGACATCCAACATTTACACCATGGTTGATGTTATGCTTCATCATATGCAAATAGAGCTTCAACAAGGACACTTGATACAGGACCTTATGTTAAAAGCGTGTGCAAGCCTTGCCTTTTTTGTTTGGACAAATGAGTTACTTCCCTTGGATATCTTGCTTCTTGCACTTACTGACCGTGACGATGATCCACATGCTTTGCGTATTGTGATCAGTTTGCTTGATAGGCAAGAGCTTCAGCAGAGAGTTAAACTCTTTTGTTTAGCTCGTGGCCCCCCTGAACATTGGCTTCACACAGGTGTATTCAAGCGAGTTGAGCTACAAAAGGCACTTGGAAATCATCTTTCTTGGAAGGATAGGTATCCCGTGTTCTTTGATGATATTGCAGCACGCTTGCTTCCAATCATTCCCTTAATTATTTACAGACTTATTGAGAATGATGCAATGGATACAGCAGAAAGACTACTGGCTCTATATTCTCAATTGCTTGCTTATTACCCTCTAAGATTTACATTTGTTCGTGATATACTTGCATATTTCTATGGTCATCTTCCTGGAAAACTCATTGTTCGAATACTCAATGTACTTGACATCAGTAAGATTCCCTTTTCAGAGTCATTCCCACAGCAAATAAGTTCGTCAAATCCTGCCATGTGCCCTCCTCTAGACTATTTTACTACTCTATTGTTGGGAATAGTAAATAATGTAATTCCTCCATTACATAACAATTCAAAATCTGGAACCATAGGAGATGCATCAAACAGTGCACTGCGTACTGCCCAAAACAAACCCCCGGCAGTATCTCAGTCTGGACTACCAAATGCTTCTGAGGGCCAAAAGGCATTCTACCAAATTCAGGATCCTGGCACATATACTCAGTTGGTTCTTGAGACTGCTGTCATTGAAATACTGTCCCTTCCCGTGTCTGCTTCTCAGATAGTACAGTCACTTGTTCAAATTGTTGTTAATATACAACCAACATTGATCCAGTCCAGCGATTCTCTCCACGGTTCCTCAAATGGTGTAGGGCAAGGTTCAGTGTTGCCAACATCACCTTCAGGGGGAAGCACAGATTCCTTGGGTGGAAGTAGATCTACTCCTTCAGCTTCTGGAGTAAATACCACTAACTTTGCTTCCCGAAGTGGTTATACAAGTCAACAACTGTCTTGCTTGTTGATTCAAGCTTGTGGCCTCCTTCTGGCCCAGCTTCCTCCTGATTTTCATGCACAACTTTACTTGGAGACGACACATATAATAAAAGAGAATTGGTGGCTTACAGATATGAAAAGGTCACTTGTAGAAATAGACTCTGCTGTTGGCTATGCTTTGTTAGATCCAACATGGGCTGCACAGAACAATACCTCCACTGCAATTGGGAATGTGGTTGCCTTGCTTCATTCTTTCTTTAGTAACCTACCTCAAGAATGGCTTGAAGGGAGTAATGTTATCATCAAGCAACTTCGGCCAGTAACTTCAATTGCAATGTTGAGGATAGCGTTCCGTATAACGGGCCCACTCCTTCCAAAACTTGCCAATGCTCATACACTTTTCAGCAAGACCCTATCCGTACTGTTAAGTATATTGGTGGATGTATTTGGAAAGAACTCCCAGATATCAATTGCTGCTGATGCATCAGAGATAGCAGATATCATTGACTTCCTTCATCATGTCATTCACTATGAAGGGCAGGGAGGGCCTGTGCAGGCTAGCAGCAAGCCTCGACCAGATGTTTTGGCACTCATTGGAAGGGCAGCAGAAAGTTTACCTTCTCATCCAAAGTTAGTCCCAAATCCAGCTTAG 4791 0.4195 MDQSQNQRSLTTPPPPSRSVQFHPARVPILDLFTLYLGLGRNSRNKPDDSLREPPNKAQKRVHAINRELPPPNEQFILDFEQLQSQFPDHEQLRFVVEAVLIPLVAQCSGHGSRSDFLIFILRSLSGIGCINWDTFLPSLLSSVSSAELPVGQMSQAVSTITSSSLSQSGMLPPPNTITNSSNFQSSNPASPLNSVHTIGSPAQPSIEPSSGAALSPVKSSDISSSQLQSKLRGGPSVENNDISNSNLRQLCCKIILTGLEFSLKPVTYAGIFNHMLNWLVNWDQRQHGVDESVILKSWRLDKTVIAWLHSCLDVIWLLVDEGKCRVPFYELLRSDFQFIENIPDDEALFTLILEIHRRRDMMALHMQMLDQHLHCPTFGTHRILNQTTPTISNSNEAIAHLRLSPLSYLSVLGEPLQGEDITTSIQKGSLDWERAVRCIRHALRTTPSPDWWRRVLVLAPCYRPSSQGITAGAVFSSEMICEAVIDRIVELSKLTNSEINCWQDWLVFSDIFYFLTKSGCIDFIDFVDKLVSRLSVGDHHILRTNHVTWLLAQIIRIELVMNALNADSRKVETTRKVLSFHREDRSSDPSSPQSVLLDFVSSCQNLRIWSLNTTTRDYLNNEQLQKGKQIDEWWRQASKGDRMMDYMNMDERSIGMFWVVTYTMAQPALETVMNWLTSAGVIDLLPTTNLQPAERIVCTREVSPLPISLLSGFSLNLCLKLSYQMEDSLFSGQIIPSIAMVETYTRLLLIAPHSLFRSHFNHLVQKNPSLLSKPGVTLLVLEMLNYRLLPLYRYQGKSKALMYDVTKIISALKGKRGDHRVFRLAENLCLNLIFSLRDFFLVKREGKGPTEFTETLNRVTVITLSILIKTRGIADADHLLYLQNMLDQIMAVSVHTWSEKTLRYFPSVMREALSGRPDKRSLAIQTWQQAETTVINQCTQLLSPSADPSYVMTYISHSFPQHRQYLCAGALILMHGHAENINSGNLGRVLREFSPEEVTSNIYTMVDVMLHHMQIELQQGHLIQDLMLKACASLAFFVWTNELLPLDILLLALTDRDDDPHALRIVISLLDRQELQQRVKLFCLARGPPEHWLHTGVFKRVELQKALGNHLSWKDRYPVFFDDIAARLLPIIPLIIYRLIENDAMDTAERLLALYSQLLAYYPLRFTFVRDILAYFYGHLPGKLIVRILNVLDISKIPFSESFPQQISSSNPAMCPPLDYFTTLLLGIVNNVIPPLHNNSKSGTIGDASNSALRTAQNKPPAVSQSGLPNASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSASQIVQSLVQIVVNIQPTLIQSSDSLHGSSNGVGQGSVLPTSPSGGSTDSLGGSRSTPSASGVNTTNFASRSGYTSQQLSCLLIQACGLLLAQLPPDFHAQLYLETTHIIKENWWLTDMKRSLVEIDSAVGYALLDPTWAAQNNTSTAIGNVVALLHSFFSNLPQEWLEGSNVIIKQLRPVTSIAMLRIAFRITGPLLPKLANAHTLFSKTLSVLLSILVDVFGKNSQISIAADASEIADIIDFLHHVIHYEGQGGPVQASSKPRPDVLALIGRAAESLPSHPKLVPNPA 1596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03947 1596 Pfam Mediator complex subunit 23 695 1183 IPR021629 -
Vifa3g03947 1596 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 46 1585 IPR021629 -
Vifa3g03947 1596 MobiDBLite consensus disorder prediction 165 219 - -
Vifa3g03947 1596 MobiDBLite consensus disorder prediction 1332 1370 - -
Vifa3g03947 1596 MobiDBLite consensus disorder prediction 1 22 - -
Vifa3g03947 1596 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03947 Vifa-Chr3 1166451373 1166489755 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03947 K15166 - gmx:100798789 2767.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03947 3 1166451373 1166489755 Vifa3g03947 3 1166451373 1166489755 ECH