Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03842 ATGGGTCCTCTTACCATGGATACCATCTTTGATCTCATCGAAGAGGCTAAGCTCCGTTTTCTCTGGTGGTCTCTTTGTATTTTCGCCATTTCCTATTTCTTGACTCATACAAGTAAATCAATGTGGATGAATATACCAATTTCCATTCTGTTTTTGGCTGGTTTGAGGATTCTTGTGAACAAGGTGGAGTTTCGTTGGAAGGTTCAGTCACCTAAATTACAAACTTACCTATCTCATTTGGACAAAAAGCAGCTGCCTCTAGACCATGAGCGCATCTCTACTTCACTCCCCCCTCCCAAATGGAAGAAAAAGATTGATTCTCCTGCAGTGGAGGCTGCCTTGAACGATTTCATTGATTTAATATTGAAGGATTTCGTTATAAATATGTGGTATGCAGACATTACTTCAGATGGGGAGTTTCCTGAGCAGATGCGCGACTTAATCATGGACGCTATTGCTGAAGTCTCGGTTAGGGTTAGAGAGATTAACATTGTTGACTTGCTCACAAGTGATATAGTTGATTTAATAAGTGATCATATAGACCTCTTCAGAAGGAATCAAGCTGCTATAGGTGTTGATGTTATGTTAACATTGTCTTCTGAGGAGAGGGATGAAAGATTGAAATTCCATCTATTGAACTCGAAGGAGCTTCATCCAGCACTTATATCTCCAGAGAGTGAGTACAAGGTTCTTCAGCGGTTAATGAGTGGAGTACTAGCTACGGTACTAAGAAAACCAGAAGCTCATGTTCCTGTCGTTCGATCAATAGCTCGGGAAATTATGACATGCTTGATATTGCAACCTCTAATGAATTTGGCATGCCCTGCGTATATCAATGAGCTGATTGAGTCTCTTCTACTATTCCTTAATGACGGGGATATAAGTTGGATGCGCGGTTGGGATCAAAGTTCAAATGCTACGACTCACAATCATATTAATCAGGCATCCTCTTCTGATTGGGCACAAATGTTGGACGCTGCGACTCAGAGAAGAACCGAAGTTCTTATGCCTGAGAATCTTGAGAACATGTGGGCAAGAGGAAGGAATTACAGAAAGAAAAGTCGTAAAAATGCAAAATCTGGATCTCATGCAAAACATTCTTCTGCAGATCATTCACCTTTTGACAAACATTTCACTCATGAAACATCAGTGAATAAACCTGGTGGAACATTGCATACTGTGGGTTCAGATCCCACACTATATAATGTAATTGCAGCTGCATTGGAGTCTTCAGCAGATAATGGCAAGAATTTATCTTTTGAAGGAGATCATCAACATGTTGACGAAGTGAGTGATATCAAGGATCTTGGTTCTAGTAAACATAAACTTCATCTCAGGAGAACCGAAAGTACTTCTGTCTTGGGAACCCATTCACATAAAGGAGGGCTCAATGTGTCCGAGTGCTACTCCCCTGATTTTAAGAAACGTGAAGGTTTTCGGGGAAAGATTGGTTCTGAAATGGGAGTCCCTTCACATAAAGGCGGGGTCAATGTGTCAGAGTGCAACTCCCCTGATTTTAAGAAGCGTGAAGGGTTGCGGGGAAAGACTGGTTCTGACATGGTTATTAGGAAAGAGGGACAAGGTGTTCCAAAGCTTCGGTGTCGGGTGATGGGAGCCTATTTTGAGAAACTTGGAGCCACTTCTTTTGCTGTATATTCAATCGCAGTGACCGACGGGCAAGAAAAAACATGGTTTGTAAAACGAAGATACAGGAACTTTGAGCGATTGCATCGACATCTAAAACATATTCCCAATTACACATTACATTTGCCTCCCAAAAGGATATTTTCCTCGAGCACAGAAGATGCCTTTGTACATCAGCGTTGCATTCAACTTGATAAATATCTCCATGATCTCCTATCAATAGCTAACGTAGCTGAACAACACGAAGTATGGGACTTCTTAAGTGTTTCCTCAAAGAATTACTCTTTTGGGAAATCTTCTTCAATGATGAGGACCCTGGCAGTCAATGTAGACGATGCCGTGGACGATATTGTACGGCAGTTTAAAGGTGTTTCAGATGATTTAAAGCGAAAAGTTGTCACTGCATCATCCCCTCCTGCTGAAGGCTCTTCTACATCTTTCACTTGGAACATGGATGAAATGGATACTAATAGTAGTATTCCAAGGAAAAGTGGTGCAGACAGTGTGTTGAGCTCTGATAATGAGGAAGGTGAAAAAGAATCGAATCATGCACGTGAGAATATCGATAGAGAAGTAGGAGAAGATAGCGCGGGGCATTCTGACAATGAACCGAGCTCGAAGGAATGTTCACAAGGGGTAACAAACCATAGTAATGCGCCTGGTAACTTGGATCTTGATAGAAAAGTCGATGTTGCGATGGAAACAAAGGTTAGCAAGGATGTTCCAACTACAAATGGAAATCTAATCCATGATAATCCGGACGACCCAATTGGAGTGCCGCCTGAGTGGACTCCCCCTAATGTGAGTGTCCCTATTTTGAATTTGGTCGACAATATATTTCAGCTAAAGAAAAGAGGATGGCTAAGAAGACAGGTCTTTTGGATATCAAAACAGATACTGCAGTTGGTCATGGAAGATGCAATTGACGATTTACTCCTGAGAGAGATTCATTGGCTCAGGAGAGAGGAAACCATCGTCCAAGGAATTCGGTGGATCCAAGATATCCTCTGGCCCGGTGGCACGTTTTTCTTAAGAATCCAGACTCCTCAGTTGTTTATCGGTGGTGGTGTAATTGATCAGAATCCTTTACAAAGTGAATCTGGAGGAAGTAATGTGCGTAAATCACAATCAGGAGGGTATTTCGAGGAACAATTAGAAGCTGCTCGTAGAGCAAGTGACGTGAAGAAACTTCTCTTTGATGGAGCTCCGGCAGCATTAGTTAGCTTAATCGGCCAGAAGCAGTACAAACGTTGTGCCAGTGATATATATTACTTTAGTCAGTCTTCTGTATGTGTGAAGCAACTTGCTTATGCAATCCTTGAACTTCTCCTTATATCCATCTTCCCGGAATTGCGCAATGTCGTCATGAGCGTTCACGAGAATATGCGTGTTCATCAACCTGTATAG 3051 0.4195 MGPLTMDTIFDLIEEAKLRFLWWSLCIFAISYFLTHTSKSMWMNIPISILFLAGLRILVNKVEFRWKVQSPKLQTYLSHLDKKQLPLDHERISTSLPPPKWKKKIDSPAVEAALNDFIDLILKDFVINMWYADITSDGEFPEQMRDLIMDAIAEVSVRVREINIVDLLTSDIVDLISDHIDLFRRNQAAIGVDVMLTLSSEERDERLKFHLLNSKELHPALISPESEYKVLQRLMSGVLATVLRKPEAHVPVVRSIAREIMTCLILQPLMNLACPAYINELIESLLLFLNDGDISWMRGWDQSSNATTHNHINQASSSDWAQMLDAATQRRTEVLMPENLENMWARGRNYRKKSRKNAKSGSHAKHSSADHSPFDKHFTHETSVNKPGGTLHTVGSDPTLYNVIAAALESSADNGKNLSFEGDHQHVDEVSDIKDLGSSKHKLHLRRTESTSVLGTHSHKGGLNVSECYSPDFKKREGFRGKIGSEMGVPSHKGGVNVSECNSPDFKKREGLRGKTGSDMVIRKEGQGVPKLRCRVMGAYFEKLGATSFAVYSIAVTDGQEKTWFVKRRYRNFERLHRHLKHIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLHDLLSIANVAEQHEVWDFLSVSSKNYSFGKSSSMMRTLAVNVDDAVDDIVRQFKGVSDDLKRKVVTASSPPAEGSSTSFTWNMDEMDTNSSIPRKSGADSVLSSDNEEGEKESNHARENIDREVGEDSAGHSDNEPSSKECSQGVTNHSNAPGNLDLDRKVDVAMETKVSKDVPTTNGNLIHDNPDDPIGVPPEWTPPNVSVPILNLVDNIFQLKKRGWLRRQVFWISKQILQLVMEDAIDDLLLREIHWLRREETIVQGIRWIQDILWPGGTFFLRIQTPQLFIGGGVIDQNPLQSESGGSNVRKSQSGGYFEEQLEAARRASDVKKLLFDGAPAALVSLIGQKQYKRCASDIYYFSQSSVCVKQLAYAILELLLISIFPELRNVVMSVHENMRVHQPV 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03842 1016 CDD PX_SNX19_like_plant 532 636 - -
Vifa3g03842 1016 MobiDBLite consensus disorder prediction 679 773 - -
Vifa3g03842 1016 MobiDBLite consensus disorder prediction 363 382 - -
Vifa3g03842 1016 Gene3D - 534 647 IPR036871 GO:0035091
Vifa3g03842 1016 Pfam PX domain 560 637 IPR001683 GO:0035091
Vifa3g03842 1016 MobiDBLite consensus disorder prediction 720 750 - -
Vifa3g03842 1016 PANTHER PX SERINE/THREONINE KINASE PXK 103 1011 - -
Vifa3g03842 1016 ProSiteProfiles PXA domain profile. 107 286 IPR003114 -
Vifa3g03842 1016 SMART PXA_3 107 290 IPR003114 -
Vifa3g03842 1016 MobiDBLite consensus disorder prediction 484 514 - -
Vifa3g03842 1016 MobiDBLite consensus disorder prediction 348 391 - -
Vifa3g03842 1016 ProSiteProfiles PX domain profile. 530 642 IPR001683 GO:0035091
Vifa3g03842 1016 Pfam Sorting nexin C terminal 835 977 IPR013937 -
Vifa3g03842 1016 SUPERFAMILY PX domain 532 639 IPR036871 GO:0035091
Vifa3g03842 1016 SMART PX_2 528 638 IPR001683 GO:0035091
Vifa3g03842 1016 MobiDBLite consensus disorder prediction 685 719 - -
Vifa3g03842 1016 MobiDBLite consensus disorder prediction 751 769 - -
Vifa3g03842 1016 Pfam PXA domain 107 285 IPR003114 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03842 Vifa-Chr3 1130248630 1130254153 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03842 K17925 - gmx:100804013 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03842 3 1130248630 1130254153 Vifa3g03842 3 1130248630 1130254153 ECH