Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03798 ATGGGTTCTGAGGTAGAACAACACATTCCAAACCAAACGACAAACACAAACATTAACAAATCCAATGAAAACAAAAACACAAACACCAACACCAACGGTAACATTTCCGTTGCAAAAACTCTCTCAATAGTCCAACCTCATTCACTTCTCCCAAAACCAACACCACCAATCGCCACTTCAAATCCCAAACCCCCAAACGACGCCGCTCCGTCAACATTCAAAACATTCTTCCGCCAACGTAGTAACAACCTGTCGTCGGCTATATCGCGGACGATCTCGTCGATAAAAACATCCATCGACGACATAAACGACAAAAACAACTCGTCGTTTAACGATGTTACGGAATTCAAACTATCAGGTCTAAAAGTAGTTGTAGAGACGAAAAACGACTTGTCGTTGGGCAAAGTTCAAATCACGTTGTTTTCTAAATCCAACTGCAGAGACTGTTCTGCAGTTCGAAGATTCTTCAAGGAGAGAGGAATCAAATTCGTTGAAATCAACGTCGATGTGTACACCGAGAGGGAAAATGAGCTGTATCAAAGAACGGGAAACACAAACGTTCCCAAGATTTTCTTCAACGGGGAGCTGATCGGAGGATTGGTGGAGCTGAACGCGATGAGGAAGAACGAAGGCGGTGAATTGGAGAAGAAGCTGAATGAAGTTGCGGATGAGAAGTTTTCCGGCGATGTTCCGGTGGCGCCGGAGTATGGATTTGATGAGGTGGCGGAAGAGGTGGTGGAGGAGGAGGTGGAGATTGTGAAGGTGGTGAGAGCGTTGAGACAGAGGTTGCCGATTCAAGATCGGTTGGTGAAGATGAAGATTGTGAGAAATTGTTTTGCTGGGACTGAGTTGGTGGAGTTTCTTATTCGTCACCATGGATATGTTCATGCTGAGGCGGTTGAGATAGGAAGTCTGTTATGCCAAAAGTACTTCATCAATTCAGTTTTCGGGGAAATTGATTTCGAGGAGGGAAATCACTTCTACCGATTCCTTGAGCACGAAGCTTTTATCCCAAAATGTTTCAATTTCCGTGGTACCACAAATGACAGTGAACCGAAAAATGCAGCTACAGTTTGTGATAGACTTACCAAGATTATGTATGCTATTCTTGAATCTTATGCTTCTGAAGATAGGAGACGTGTTGATTATGTGGCCATCAGCAAAAGTGAGGAATTTCGAAGGTATGTAAACATGACTCAGGATCTGCAGAGGGTGGATCTCTTAGAACTATCTGAAAACGAGAAACTCGCCTTCTTCTTAAACATGTACAATGCCATGGTTATCCATGCTATGATAAGAGTAGGGTGTCAAGAAGGTGCGATTAATAGGAGATCCTTCTCGGATTTCCAGTATCTGATCGGAGGACATCCTTATTCTCTTGCCATTATTACAAATGGTATTCTTAGAAGCAATCGGAGGTCGCCTTATTCCTTAGTCAAGCCCTTTGGCACAAGAGACAGACGGTTAGAGGTTGCAGTTGTCAAAATGAATCCTTTGATTCACTTTGGACTTTGTAATGGCACAAAGTCAAGCCCAAAGGTCAGATTTTTTTCACCTTGTAGAGTTGCAGAAGAATTGAGATGTGCAGCTAGAGAGTTCTTAGAGAACGATGGAATCGAAGTTGACCTAGAGAAGAGGACTCTTCATCTCAGTCCAATTTTTAAGTGGTACAGTGCAGATTTTGGACATGAGAGAAATGTGGTAAAATGGATAATGAACTACTTGGATGCAAACAAAACAGGTCTTTTGACACATCTCTTAGATGATGGTGGTCCAGTTCATATATCATACAAAAATTATGATTGGTCAATAAATTCTTGA 1821 0.4234 MGSEVEQHIPNQTTNTNINKSNENKNTNTNTNGNISVAKTLSIVQPHSLLPKPTPPIATSNPKPPNDAAPSTFKTFFRQRSNNLSSAISRTISSIKTSIDDINDKNNSSFNDVTEFKLSGLKVVVETKNDLSLGKVQITLFSKSNCRDCSAVRRFFKERGIKFVEINVDVYTERENELYQRTGNTNVPKIFFNGELIGGLVELNAMRKNEGGELEKKLNEVADEKFSGDVPVAPEYGFDEVAEEVVEEEVEIVKVVRALRQRLPIQDRLVKMKIVRNCFAGTELVEFLIRHHGYVHAEAVEIGSLLCQKYFINSVFGEIDFEEGNHFYRFLEHEAFIPKCFNFRGTTNDSEPKNAATVCDRLTKIMYAILESYASEDRRRVDYVAISKSEEFRRYVNMTQDLQRVDLLELSENEKLAFFLNMYNAMVIHAMIRVGCQEGAINRRSFSDFQYLIGGHPYSLAIITNGILRSNRRSPYSLVKPFGTRDRRLEVAVVKMNPLIHFGLCNGTKSSPKVRFFSPCRVAEELRCAAREFLENDGIEVDLEKRTLHLSPIFKWYSADFGHERNVVKWIMNYLDANKTGLLTHLLDDGGPVHISYKNYDWSINS 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03798 606 Pfam Glutaredoxin 138 197 IPR002109 -
Vifa3g03798 606 MobiDBLite consensus disorder prediction 49 63 - -
Vifa3g03798 606 MobiDBLite consensus disorder prediction 47 72 - -
Vifa3g03798 606 SMART DEP_3 259 332 IPR000591 GO:0035556
Vifa3g03798 606 SUPERFAMILY Thioredoxin-like 136 220 IPR036249 -
Vifa3g03798 606 ProSiteProfiles DEP domain profile. 259 332 IPR000591 GO:0035556
Vifa3g03798 606 Gene3D - 244 382 IPR036388 -
Vifa3g03798 606 CDD DEP 257 329 - -
Vifa3g03798 606 Gene3D Glutaredoxin 133 222 - -
Vifa3g03798 606 SUPERFAMILY "Winged helix" DNA-binding domain 252 351 IPR036390 -
Vifa3g03798 606 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g03798 606 ProSiteProfiles Glutaredoxin domain profile. 126 225 - -
Vifa3g03798 606 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 263 330 IPR000591 GO:0035556
Vifa3g03798 606 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 21 605 - -
Vifa3g03798 606 PRINTS Glutaredoxin signature 180 193 IPR014025 -
Vifa3g03798 606 PRINTS Glutaredoxin signature 194 207 IPR014025 -
Vifa3g03798 606 PRINTS Glutaredoxin signature 138 156 IPR014025 -
Vifa3g03798 606 Pfam Protein of unknown function, DUF547 409 534 IPR006869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03798 Vifa-Chr3 1113690119 1113694163 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03798 - - psat:127093764 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03798 3 1113690119 1113694163 Vifa3g03798 3 1113690119 1113694163 ECH