Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03394 ATGCTAAACCTCGTATTCCTCTCCCTAACTATCACCATTTGTCTCTCCATTTTCCATGTACAATCCCTCACTTCATCCTCAGACATTCAAGCTCTCAAAGCCTTCAAAGCCTCAATCAAACCCTCTTCAATCCCACCCTCCTCATGCATATCTTCATGGAACTTCACCATTGATCCATGCTCTCTCCCTCGCCGCATTTACTTCCTCTGCGGATTCACCTGCACCGCCGATTCCACACACATCAACCAAATCACACTCGACCCTGCAAGTTACTCAGGTTCACTCACTCCACTCATCTCTCAACTCACACAACTCATCACACTAGACCTCTCCGACAACAATTTCTTTGGCTCAATCCCATCTTCAATCTCTTCCCTCTCAAATCTCAAAACCTTAACCCTCCGATCCAACTCCTTCTCCGGATCAATCCCTCTCTCAATAACCAAACTCAAATCTCTCGAATCTCTAGATTTCTCACATAACTCCCTATCCGGGCCTATCCCAAACTCGATAAATTCCCTTGCAACCATTCGCAGAATCGATTTAAGCTTCAATAAACTAACCGGCTCAATCCCGAAACTACCTTCAAACTTACTCGAACTCGCAATCAAGAACAACTCTTTATCCGGGCCACTTCAAAAAACAACGTTCGTCGGATCAAACGAACTAGCAGTAGTGGAACTCAGCGAGAATTCACTCACCGGAACAATCGAATCATGGTTCTTGCTTCTACCCTCTCTGCAGCAAGTGAATTTAGCCAACAACAGCTTCACAGCGATTCAGATCTCAAAACCAGCTCACCCTGAAGAAAGCAACCTCGTGGCATTGAACCTCGGGTTTAACAAAATCCAAGGTTCCGCGCCCGCGAATCTCGCTGCATATCCTATGCTGTCGTTTTTGTCGATTCGATATAATTCTTTACGTGGGAATATACCATTGGAGTACGGAGAGGTCAAGTCTATTAAGAGGTTGTTCTTGGACGGGAACTTCTTCGTCGGGAATCCGCCGCCGGGGTTGTTGGCCGCCGGAGCTACGGTTTCCGGTAGCTTGGGGGATAATTGTCTACAGGGGTGTCCAGTTTCTTCGAAAATGTGTACGCCAGCACAGAAACCCAGTTCTGTTTGCAAACGTGGAAGATCATAG 1143 0.4663 MLNLVFLSLTITICLSIFHVQSLTSSSDIQALKAFKASIKPSSIPPSSCISSWNFTIDPCSLPRRIYFLCGFTCTADSTHINQITLDPASYSGSLTPLISQLTQLITLDLSDNNFFGSIPSSISSLSNLKTLTLRSNSFSGSIPLSITKLKSLESLDFSHNSLSGPIPNSINSLATIRRIDLSFNKLTGSIPKLPSNLLELAIKNNSLSGPLQKTTFVGSNELAVVELSENSLTGTIESWFLLLPSLQQVNLANNSFTAIQISKPAHPEESNLVALNLGFNKIQGSAPANLAAYPMLSFLSIRYNSLRGNIPLEYGEVKSIKRLFLDGNFFVGNPPPGLLAAGATVSGSLGDNCLQGCPVSSKMCTPAQKPSSVCKRGRS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03394 380 Pfam Leucine Rich Repeat 105 126 IPR001611 GO:0005515
Vifa3g03394 380 Gene3D Ribonuclease Inhibitor 24 194 IPR032675 -
Vifa3g03394 380 Gene3D Ribonuclease Inhibitor 195 368 IPR032675 -
Vifa3g03394 380 FunFam Nuclear pore complex protein NUP107 25 193 - -
Vifa3g03394 380 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515
Vifa3g03394 380 SUPERFAMILY L domain-like 67 359 - -
Vifa3g03394 380 Pfam Leucine rich repeat N-terminal domain 26 61 IPR013210 -
Vifa3g03394 380 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 79 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03394 Vifa-Chr3 972472860 972474002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03394 91 379 Receptor kinase-like Gene Family AT5G46330 30.952 8.70e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03394 - - psat:127097922 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03394 3 972472860 972474002 Vifa3g03394 3 972472860 972474002 ECH