Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03347 ATGGAAGATGGAGATTGGGTTCTGGTGCGCGCTCCCTCACATAAACACTTGTGGAAACCATCTTTACCAAATGCCGATCAACCTTCAAGGCCATTGAAGGTTACTTTTTCTACCCCTGCTAAGTACTGGACCGACGCAATCCCAATCGGTAATGGCCGACTTGGTGCCATGGTTTCGGGTGGTGTTCAAACTGATGTTCTACACCTCAATGAGGACACGCTATGGACTGGAGTACCTGGCAACTACACCGACAAAAATGCTCCTGAGGTGCTGGCGGAAGTCCGAAAACTTGTTGATGACCGTAAATATCCCGAAGCTACAACAGCAGCTGAGAAATTGTCAGGAATTCCTTCTGAAGTATACCAACTCCTTGGCGATATTAAATTAGAGTTCGATGATGCTCATCTTAAATATTCGGAGGAGTCTTATCGCAGGGAGCTGGATTTGGATACTGCAACAGCAAAAATAAAATACAATGTCGGTGATGTAGAATTTACCAGAGAGCATTTTTCTTCTCATCCTGACCAAGTGCTAGTTGCAAAGTTTTCCACTAGCAAGTCAGGGTCATTATCATTTACAGTATCTTTGGATAGCAAATTACATCACAATTCACGGTTAAACAGCCAAAATCAGATAATATTGGAAGGAAGTTGTCCTGTCAAAAGGATCGCGCCACACCTCAATCCCAATGGCGAACCGAAGGGAATTCAGTTTTGTGCAGTTCTTGATCTGCAGATTAGTAATGGCAAAGGAGTTATACATGCTTTGGATGATAAGAAGCTTAGAGTTGAAGGTGCAGACTGGGCTATTTTACTTCTGACAGCTTCCTCTACTTTTGATGGTCCATTTATTAATCCTAAAGACTCTAAGAAGGATCCTACTTCCGAGTCCTTGAGTCAAATGAAGTCTGTGAAAAGCTTTTCATATGATAATATATATGCACGTCATTTGGATGATTATCAGCATCTATTTCATCGGGTCACGTTGCAACTCTCTAAAAGTTCCAAGACTAATATCTCTCAATTGGGAGGTGATGATACTGTTCCAACTTCATCAAGAGTCGAATCATTTCGAAATGATGAAGATCCTTCCTTTGTGGAGCTTTTGTTTCAATATGGTCGATATCTACTAATTGCTTGTTCACGTCCTGGAACTCAGGTGGCAAACCTACAGGGTATTTGGAACAAAGATGTTTCACCTGCATGGGATGGGGCTCAGCACTTGAACATAAATCTTCAAATGAATTATTGGCCATCCCTTTCTTGCAACCTACGTGAGTGTCAAGAGCCATTATTTGATTACATTTCCTCTATGTCAGTCAATGGTAGTAAAACCGCAAAGGTGAATTATGAAGCAAATGGTTGGGTTGCACATCAGGTTTCTGACTTATGGGTTAAAACATCCCCAGATCGAGGTCTGGCTGTTTGGGCTTTATGGCCAATGGGTGGAGCTTGGTTGGCTACCCATCTATGGGAGCATTACACTTATACAATGGACAAAGAATTTCTAAAAAATAAAGCATATCCTTTGTTGGAAGGATGTACATCATTTTTGTTGGATTGGTTGATTGAAGGCCCTGGTGGACTATTGGAAACTAACCCATCAACTTCACCAGAGCACATGTTCATTGCACCAGATCAAAAGCAAGCTAGTGTGAGCTACTCATCAACCATGGACATTTCAATCATAAAAGAAGTTTTCTCTATAGTTGTTTCTGCCGCTGAGGTTTTGGGAAGACATGATGATGCTATTATCAAAAGAGTAATTGCGTCTCAGTCTAAGCTTCCTCCTACAAAAATAGCTAGGGATGGATCCATTATGGAATGGGCTGAAGATTTCCAGGACCCAGAGCCAAATCATCGACATGTTTCACATTTGTTTGGCTTGTTTCCTGGGCACACAATAGATCTTGAAAAAACTCCAGATCTCTGTAAAGCTGTTGATAATAGTCTAATTAAAAGAGGAGAGGATGGTCCCGGATGGTCAACAACTTGGAAAGCTGCATTGTGGGCTCACCTTCACAACGGTGAGCATGCATATCGCATGATAAAACACTTGATTATCTTGGTGGACCCTGAGCATGAGGCAAATTACGAAGGAGGACTTTACAGTAACCTGTTCACAGCACATCCTCCATTCCAAATTGATGCAAACTTCGGTTTTTCATCAGCAATTGCAGAAATGCTTGTTCAAAGCACAACAAAAGACCTCTACTTACTTCCCGCGTTGCCTCGTGATAAATGGGCAAGTGGTTGTGTGAAAGGATTAAAAGCTCGTGGCGGGGTGACTGTTAACATCTGTTGGAAAGAAGGAAATCTGCATGAATTTGGGCTTTGGTCACAAAACCAAAATTCCAAAATGAGACTACATTATAGAGAGAGCATGGTGGTGGCAAATTTATCACCAGGCAGAGTTTACTCGTATAATAATTGCTTGAAGTGTGTTAAGACCTACTCCCTTGACGAAGTTAATCTTTGA 2478 0.4169 MEDGDWVLVRAPSHKHLWKPSLPNADQPSRPLKVTFSTPAKYWTDAIPIGNGRLGAMVSGGVQTDVLHLNEDTLWTGVPGNYTDKNAPEVLAEVRKLVDDRKYPEATTAAEKLSGIPSEVYQLLGDIKLEFDDAHLKYSEESYRRELDLDTATAKIKYNVGDVEFTREHFSSHPDQVLVAKFSTSKSGSLSFTVSLDSKLHHNSRLNSQNQIILEGSCPVKRIAPHLNPNGEPKGIQFCAVLDLQISNGKGVIHALDDKKLRVEGADWAILLLTASSTFDGPFINPKDSKKDPTSESLSQMKSVKSFSYDNIYARHLDDYQHLFHRVTLQLSKSSKTNISQLGGDDTVPTSSRVESFRNDEDPSFVELLFQYGRYLLIACSRPGTQVANLQGIWNKDVSPAWDGAQHLNINLQMNYWPSLSCNLRECQEPLFDYISSMSVNGSKTAKVNYEANGWVAHQVSDLWVKTSPDRGLAVWALWPMGGAWLATHLWEHYTYTMDKEFLKNKAYPLLEGCTSFLLDWLIEGPGGLLETNPSTSPEHMFIAPDQKQASVSYSSTMDISIIKEVFSIVVSAAEVLGRHDDAIIKRVIASQSKLPPTKIARDGSIMEWAEDFQDPEPNHRHVSHLFGLFPGHTIDLEKTPDLCKAVDNSLIKRGEDGPGWSTTWKAALWAHLHNGEHAYRMIKHLIILVDPEHEANYEGGLYSNLFTAHPPFQIDANFGFSSAIAEMLVQSTTKDLYLLPALPRDKWASGCVKGLKARGGVTVNICWKEGNLHEFGLWSQNQNSKMRLHYRESMVVANLSPGRVYSYNNCLKCVKTYSLDEVNL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03347 825 Gene3D - 271 729 IPR012341 GO:0005975
Vifa3g03347 825 Pfam Glycosyl hydrolase family 65, N-terminal domain 35 281 IPR027414 -
Vifa3g03347 825 SUPERFAMILY Six-hairpin glycosidases 291 775 IPR008928 GO:0005975
Vifa3g03347 825 PANTHER ALPHA-L-FUCOSIDASE 2 24 818 - -
Vifa3g03347 825 PIRSF UCP007663 8 823 IPR016518 GO:0004560
Vifa3g03347 825 FunFam Alpha-L-fucosidase 2 266 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03347 Vifa-Chr3 958820416 958825502 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03347 K15923 - gmx:100810387 1374.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03347 3 958820416 958825502 Vifa3g03347 3 958820416 958825502 ECH