Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03329 ATGGCTATCGATATCCTAACCTTAGAAAACAGGTATATTGATTCTTGCAGGAGACACGGTGTTTTGCCTAATGCTACTATTTTGTCAAGCTTTTTCAAGGCCGAGGTAAAAAAATCCAACCAAGAGCCATGCATCCTGGAGATTTTAATTGACGATCTTAAGGATATTGATTTTGCTCCACTCTTCGAGATATGCATGAACATTGATACTTCTGAAATAGAAGCTGTTGATGTACGTAACGAATCACCATGTGTATTAAGTGGAGAATATGCATTATCAGTGATGCGTGCTATTAAGCAAAAGCTTCGGGTAGTTGAACTACATGATGTTTCATTTGCAAAAGACTTCGTACGGGATATCTCGCAAGGTTTGACATGCCAAGTCTTGACATTGAGGTCTTGGCGTTTCCGGAAGTTGAGCTTGATGGGGGAGTTCATGCATATGCACACACTTAACCTTGATTTCAGTTCTTCCCTTACCGGTTTTGAAGAAGACTGTTTTAATTGCATGCCCAATCTAATGTGTCTCTCAATGTGTGAAACAAGAATTTCAAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTGGTTGAGCTAAGATTTCAATATTGGCAGTATTGTAATGATGAGGGAACTTCTTTTACCTCATCCAGTGGGAAGTCAGATGCCACCGCCGATTTTAGTCTGCTTGATAGAGTTCCTTTTATTGGGGAATCCTGCATTGATACAAGGGAACTAACAGATCTTAACATTAGTGTCGAGGATCCACTTAGAAATTTTTATTCCTTTGATGAAGAAGTTATGAATCATGATGTTCAAAGCATGGTCGAGGACTCATCAGATGATAGTGAAATTGAATTGACAAATCATCATCATAGAGACTGGTTGGCAGGTGTTTTTCCTAGGTGGAATTTACAAATGCCTCTTCAGAGTGAGAACGAAGAACAGTCGTCAAGAGATTACTTTACAGGGAATAGTATTGATGTTTCTATGAAGTACATGTCTTGTCATGCATCACCAATATGTCAGGAAAAACATTACAGAGAATTCATAACAGCTTCATTGCCGAAGCTGAAAAGTTTAGATAATCTACCGATCAGAAATATTGACAAGGAAAGGGCTACTGGAATATTTTCTCAGTACTTTGAATATCTTCCATACAGATGGAAGAGCAAAGAAAGTGTTTTAAGTATCTTACACAAGCGAGAAATAAAATCAGGCCGCATTAAAGCTCAATCTTCTAAGCGTAGCCCATCACATCCTTCTGGAACGTCTCAACATTTTTATACAAGGTCTCTTTCTGCTGCTAAACTAGGGTCTTCAACTTGGCCTCTCTTACATCCTCTTTCTCTATCAGGATTTGAATTGGATAAGGGATTTCGGCCAAGGCAGTTTGAGTATCACCCATCTGACTCCAGCTTGATGGTGTTTGGAACTTTAGATGGTGAAGTAGTTGTCATCAATCACGAAAGTGAACACATTGTGAGTTATATCCCATCACTTGGCGCGATGAATAGTGTCTTGGGCCTTTGTTGGCTTAAGAAATATCCTTCTAAGCTTATAGCAGGTTCAGATAATGGTTCCCTGAAATTATATGACATCAACCATACACCGAGAAAAATTACTGGCTTATACGGGAACTCTGGTTGTGTTACCTTTGATGAATTTGACCAGCTGACATCTGTTCATGTTAACTCCACAGATGAGTTATTTCTTGCAAGTGGTTACTCAAGAAATGTTGCTTTGTATGACATCAACAGTGGAAAGCGCTTACAAGTATTCACAGATATGCATCGTGGGCATATTAATGTAGTGAAGTTTGCAAATCATTCCCCATCAATTTTTGCCACTTCATCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAGAAACCAATTCACCCCTGCTTCATTGCTTCAAGCTCTAGAGGAAATGTGATGGTTTGTTTCTCTCCAGATGACCAATATATTCTAGCATCGGCAGTTGACAATGAGGTTAGACAATTTCTGGCTGTTGATGGTAGGCTTCACTTAGTTTTTGATATAGCTCCAACTGAAAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTATATTATAAGTGGAAGTTGTGATGAGCAAATTGTCCGAATTTGCTGTGCTCAAACAGGGAGGCGCCTGAGAGATATTTCCCTGGAGGGTAAAACCTTAGGAAGTTCCATGTTTGTTCAATCTTTGAGAGGCGATCCTTTCAGGGATTTCCATATGAGTGTGTTGGCAGCTTACATGCGACCTGGCTCCAAGTCTGAAATAGTCAAGATCAACTTACTAGCATCTAGTGGCCATGCTAATGACGACGCTGATGATCATCCTGTATGCCCATCCAACATTATGGGAGCTTGA 2406 0.3986 MAIDILTLENRYIDSCRRHGVLPNATILSSFFKAEVKKSNQEPCILEILIDDLKDIDFAPLFEICMNIDTSEIEAVDVRNESPCVLSGEYALSVMRAIKQKLRVVELHDVSFAKDFVRDISQGLTCQVLTLRSWRFRKLSLMGEFMHMHTLNLDFSSSLTGFEEDCFNCMPNLMCLSMCETRISNLWTTVAALSKLPSLVELRFQYWQYCNDEGTSFTSSSGKSDATADFSLLDRVPFIGESCIDTRELTDLNISVEDPLRNFYSFDEEVMNHDVQSMVEDSSDDSEIELTNHHHRDWLAGVFPRWNLQMPLQSENEEQSSRDYFTGNSIDVSMKYMSCHASPICQEKHYREFITASLPKLKSLDNLPIRNIDKERATGIFSQYFEYLPYRWKSKESVLSILHKREIKSGRIKAQSSKRSPSHPSGTSQHFYTRSLSAAKLGSSTWPLLHPLSLSGFELDKGFRPRQFEYHPSDSSLMVFGTLDGEVVVINHESEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDINHTPRKITGLYGNSGCVTFDEFDQLTSVHVNSTDELFLASGYSRNVALYDINSGKRLQVFTDMHRGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPIHPCFIASSSRGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCDEQIVRICCAQTGRRLRDISLEGKTLGSSMFVQSLRGDPFRDFHMSVLAAYMRPGSKSEIVKINLLASSGHANDDADDHPVCPSNIMGA 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03329 801 PANTHER BNAC09G30780D PROTEIN 2 800 IPR046377 GO:0071493|GO:0080008
Vifa3g03329 801 Gene3D - 462 750 IPR015943 GO:0005515
Vifa3g03329 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 633 IPR001680 GO:0005515
Vifa3g03329 801 Gene3D Ribonuclease Inhibitor 92 233 IPR032675 -
Vifa3g03329 801 MobiDBLite consensus disorder prediction 414 429 - -
Vifa3g03329 801 SUPERFAMILY RNI-like 95 216 - -
Vifa3g03329 801 SMART WD40_4 494 536 IPR001680 GO:0005515
Vifa3g03329 801 SMART WD40_4 540 587 IPR001680 GO:0005515
Vifa3g03329 801 SMART WD40_4 590 631 IPR001680 GO:0005515
Vifa3g03329 801 SMART WD40_4 636 674 IPR001680 GO:0005515
Vifa3g03329 801 MobiDBLite consensus disorder prediction 410 429 - -
Vifa3g03329 801 SUPERFAMILY WD40 repeat-like 464 731 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03329 Vifa-Chr3 956300948 956309405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03329 517 680 Miscellaneous Gene Families AT5G08390 27.879 3.77e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03329 - - gmx:100806443 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03329 3 956300948 956309405 Vifa3g03329 3 956300948 956309405 ECH