Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03291 ATGAAAGTCTTGGCGTTGATTCTAAGGATTATGATTATTTTGCTACTACTAAGTGTACAACAGAACCTCATAAGGCACAATATGGAGGGGGGTATTATAGTAAATCCAGAATTTGATCACAACATAGAGAGTTGGACAGTGTTTGGAAATGGAACAATGGAGGAACGTTTATCAAATAATGGAAATAGATTCATTGTTGCTAGCAACAGAACACAAACATTAGATAGTTTTTCACAAAAGATCCAACTCAAGAAAGAATTGATATACATGTTTTCAGGTTGGTTTCAGCTGAGTGAAGGAAGAGACCTAGTTTCTGTTGTGTTTAAAATAAATGGAAGTGAGTTGGTATATGGTGGTCATGTGATAGCAAAGAATGGATGTTGGTCTCTTCTAAAAGGTGGTATAGTCGCAAACTTCTCAAGTTCCGCCGAGATTATTTTCGAGACCAATAATCCAAGTGTGGAAATATGGGTCGATAGTGTCTCATTGCAACCGTTTACTAAAGAAGAATGGAGATCACACCAAGACAACAATATTGAGAGGGTACGTAAGAGTAGAGTGAGATTTCATGTAAGTAATGTAAATGAAACAGCTATTGAAGGAGCAAAAGTTGTCATAAAACAAACAAAAGCAAATTTTCCATTTGGATGTGGGATGAACTATCACATACTCACAAACCGCGACTACCAGGAATGGTTTGTATCAAGATTTAAATACACAACTTTCACCAATCAAATGAAATGGTATAGTACAGAGATAATTCAAGGCCAAGAAAACTATACTATCCCAGATGCAATGTTGAAATTCACCAAAGAAAATGGAATTTCTGTGAGAGGTCATAACATTTTTTGGGACGACGAAAAATATCAACCTAAATGGGTGAATTCGTTATCACCAGACGAATTAAGAGAAGCCGCGGCTAAAAGAATAAAATCTGTTGTTACAAGATATAAAGGAGAATTGATTGCATGGGATGTGATGAATGAGAATGTTCATTTTCACTTTTACGAGGATAAACTAGGTGAAAATGCGTCCGAAATATACTATTTACGAGCCTACGAGCTTGATCCAAAAACAACATTGTTTATGAATGAGTATAATACAATCGAATATAGCGGTGACAAGGTTGCTAGTCCAGTAAATTATTTCAACAAACTTAAGGAGATTCTGCAATCTCCAGAAGCTTCTGAAATGTCATTTGCAATTGGATTACAATGCCATTTTGCAAGTGGCAGGCCAAATCTTGCTTACATGAGATCAGGTCTAGATTTTCTCGGTGAAACTGGATTTCCTATATGGCTCACAGAAACCAGTGTAGATCCTCAAGCAGAACAGCACAAGCTGGTTTCAATTCTACACTTCTTGCTGATGCAAATTTTCAAACAACTCCAACTGGAAAAGTTGTGGACCAAGTTGATTAGTGAGTGGGGAACTGGACCTTATACAACAATAGCAGATGGTAGAGGAATTGTAGATATTTCATTACATCATGGAGATTATGATGTAATAGTTACTCATCCTTTAACACAACAAACTGAAAAATTAAATATAAGTGTTAGGAAAGAATGTTCACAAGAAAACATCCATGTGAAAATGCATGCCTAA 1605 0.3607 MKVLALILRIMIILLLLSVQQNLIRHNMEGGIIVNPEFDHNIESWTVFGNGTMEERLSNNGNRFIVASNRTQTLDSFSQKIQLKKELIYMFSGWFQLSEGRDLVSVVFKINGSELVYGGHVIAKNGCWSLLKGGIVANFSSSAEIIFETNNPSVEIWVDSVSLQPFTKEEWRSHQDNNIERVRKSRVRFHVSNVNETAIEGAKVVIKQTKANFPFGCGMNYHILTNRDYQEWFVSRFKYTTFTNQMKWYSTEIIQGQENYTIPDAMLKFTKENGISVRGHNIFWDDEKYQPKWVNSLSPDELREAAAKRIKSVVTRYKGELIAWDVMNENVHFHFYEDKLGENASEIYYLRAYELDPKTTLFMNEYNTIEYSGDKVASPVNYFNKLKEILQSPEASEMSFAIGLQCHFASGRPNLAYMRSGLDFLGETGFPIWLTETSVDPQAEQHKLVSILHFLLMQIFKQLQLEKLWTKLISEWGTGPYTTIADGRGIVDISLHHGDYDVIVTHPLTQQTEKLNISVRKECSQENIHVKMHA 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03291 534 SUPERFAMILY (Trans)glycosidases 199 443 IPR017853 -
Vifa3g03291 534 SMART glyco_10 246 494 IPR001000 GO:0004553|GO:0005975
Vifa3g03291 534 Pfam Glycosyl hydrolase family 10 209 464 IPR001000 GO:0004553|GO:0005975
Vifa3g03291 534 SUPERFAMILY Galactose-binding domain-like 31 165 IPR008979 -
Vifa3g03291 534 Gene3D Glycosidases 203 482 - -
Vifa3g03291 534 Gene3D - 24 166 - -
Vifa3g03291 534 Pfam Carbohydrate binding domain 31 149 IPR003305 GO:0016798
Vifa3g03291 534 PANTHER GLYCOSYL HYDROLASE 26 521 IPR044846 GO:0004553|GO:0005975
Vifa3g03291 534 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 200 534 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03291 Vifa-Chr3 944728676 944731171 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03291 21 522 Glycoside Hydrolase AT4G33840 45.386 1.28e-163 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03291 - - gmx:100777980 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03291 3 944728676 944731171 Vifa3g03291 3 944728676 944731171 ECH