Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03288 ATGAAGGTTGTTGTTGCAGCAGAGCTTTGCATTTTCTTGCTCTCCGCATCTTGCCTTCAACTCCTTTCTTCAGGGTTTCAACTCCATTCTAAACCCTATGATTATTCTGCTACTACTAAGTGTGTGAAAAAACCTCATAGGGCACAATATGGAGGAGGCATTGTAGTAAATCCAGGGTTTGAACATAACTTAAAGGGTTGGACTGTGGTTGGAAATGGAACAATTAAGGAACGGGTATCGAATGATGGCAATCGATTCATTGTTTCTCGCAACAGAACGCGAGCATTGGATGGTTTCTCACAGAAGGTTCATCTGAAGAAAGGAATTATATACATTTTTTCTGCTTGGTTTCAGCTGAGTGAAGGAAGTGGCATTGTTTCGGTTGTTTTTAAAACAAATGGAAGTGAATTGGTACATGGTGGTCATGTGATAGCCAATCATGGTTGCTGGTCTCTGCTAAAAGGGGGCATAGTTGCTAACTTTTCAAGCCCTGCTGAGATTCTTTTTGAGGTTGAGAATCCAACTGTGGAGTTATGGGCTGACAGTGTGTCCTTACAACCATTCACCAAAAAGCAGTGGAGATCACACCAAGACGACAGTGTTGAGAGGGTACGTAAGAGCAAAGTGAGATTCCAACTAACTCATCCAAACGAAACAGTGTTGGAAGGAGCAACAGTTGTTATAAAACAAACAAGGGCAGATTTTCCATATGGATGTGCGATGAACCATAATATCCTCACAAACAGTGACTACCAGAAATGGTTTGTTTCAAGATTCAAATACACAACTTTTACCAATGAGATGAAATGGTATAGTACAGAGAAAATTCAAGGCAAGGAAGACTATACTATCCCAGATGCCATGTTACAATTTGCCAAAGAAAATGGCATTTCTGTGAGAGGTCATAATATTTTGTGGGACAGTCCAAATCGTCAACCTCACTGGGATTTAACCCTGTCTCCCGACGAATTACGTGTAGCAGCTGAAAAAAGAATGAATTCTGTTGTCTCAAGGTATAAAGGACAACTTATTGCTTGGGATGTCGTGAATGAGAATGTCCACTTCCATTTTTTTGAGGACAAACTCGGCGAAAATGTCTCTGCAGAATATTATTCAGCAGCTTACCATCTTGATCCAAACACCAAGATGTTCATGAATGAGTATAACACCATTGAGTTCAGCGGGGATAAGGATGCCAGCCCAGCCAACTATATCAGGAAACTTAAGGAGATTCAGCAATTTCCAGGAACTGCTGGAATATCACTAGCCATTGGGTTGCAATGCCATTTTTCAACTGGTGTGCCAAACCTTGCTTACATGAGGTCCGGTCTAGATCTTCTTGCTGCAACTGGACTTCCCATATGGCTCACAGAAACCAGTGTCGACCCTCAGCCAAATCAGGCAGAGTACTTTGAACAGATACTAAGAGAGGGTTTCTCTCATCCTGCTGTTCAAGGGATTGTAATGTTTGTAGGACCAAAACAAGCTGGTTTCAACAGTACATTACTTGCGGATGCAAATTTTCAAAATACTGCTGCCGGAGATGTTGTGGACAAGCTGATTCGCGAGTGGAGAACTGGTCCTCAAACAGCCATAGCAGATAGTAGAGGAATTATAGATATTTCACTACATCATGGGGATTATGATGTTACTGTTACACACCCTCTAACCCAATACTCCAAAACACTGAATATTAGTGTAAGGAAAGGATTTTCTCTGGAAACTGTCCATGTGAAAATGCATGCCTAA 1749 0.4145 MKVVVAAELCIFLLSASCLQLLSSGFQLHSKPYDYSATTKCVKKPHRAQYGGGIVVNPGFEHNLKGWTVVGNGTIKERVSNDGNRFIVSRNRTRALDGFSQKVHLKKGIIYIFSAWFQLSEGSGIVSVVFKTNGSELVHGGHVIANHGCWSLLKGGIVANFSSPAEILFEVENPTVELWADSVSLQPFTKKQWRSHQDDSVERVRKSKVRFQLTHPNETVLEGATVVIKQTRADFPYGCAMNHNILTNSDYQKWFVSRFKYTTFTNEMKWYSTEKIQGKEDYTIPDAMLQFAKENGISVRGHNILWDSPNRQPHWDLTLSPDELRVAAEKRMNSVVSRYKGQLIAWDVVNENVHFHFFEDKLGENVSAEYYSAAYHLDPNTKMFMNEYNTIEFSGDKDASPANYIRKLKEIQQFPGTAGISLAIGLQCHFSTGVPNLAYMRSGLDLLAATGLPIWLTETSVDPQPNQAEYFEQILREGFSHPAVQGIVMFVGPKQAGFNSTLLADANFQNTAAGDVVDKLIREWRTGPQTAIADSRGIIDISLHHGDYDVTVTHPLTQYSKTLNISVRKGFSLETVHVKMHA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03288 582 Pfam Glycosyl hydrolase family 10 231 469 IPR001000 GO:0004553|GO:0005975
Vifa3g03288 582 Gene3D - 42 188 - -
Vifa3g03288 582 Pfam Carbohydrate binding domain 53 160 IPR003305 GO:0016798
Vifa3g03288 582 Gene3D Glycosidases 224 528 - -
Vifa3g03288 582 PANTHER GLYCOSYL HYDROLASE 32 569 IPR044846 GO:0004553|GO:0005975
Vifa3g03288 582 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 222 520 IPR001000 GO:0004553|GO:0005975
Vifa3g03288 582 SUPERFAMILY Galactose-binding domain-like 51 187 IPR008979 -
Vifa3g03288 582 SUPERFAMILY (Trans)glycosidases 221 528 IPR017853 -
Vifa3g03288 582 SMART glyco_10 268 520 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03288 Vifa-Chr3 942726425 942729158 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03288 29 567 Glycoside Hydrolase AT4G33840 51.476 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03288 - - gmx:100777980 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03288 3 942726425 942729158 Vifa3g03288 3 942726425 942729158 ECH