Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03255 ATGGCCACGGTTTTGAAGTCAGTGGCTACTTCAGCTAGAAATCTAAGCCTTTCGGGACAATCTAGTTATCACCATTCAGTTGATTTGAGTAACCGCGTTTCAAATCTTGGATTTTGTTTCAAAGGTGATGAGAAATGGAAGAGAAAACATAGGGTTAAGGTTAGAGCAATAGCTGAAGTGGACGTGGAGGGTTTGAAGAGAAGTAGTGTTGCATTGGAGGGAAGTTTGGGGTTGGATATAGTTTCAGAAGGAGAGTTAATGGTGAAGGGTTTTAGAGGGTTGAGGAAGACAAAGCTTGTGTGTACGGTTGGGCCTGCTTGTAGTTCATTGGAGGATTTAGAGAAGATGGCATTGGGTGGAATGAATGTTGCAAGGCTTAACATGTGTCATGGGAGTAGAGAATGGCACCGGGATGTGATTAGGAAGATTAAGAAGCTGAATGAGGAAAAGGGGTTTGCGGTTTCTGTTATGATTGATACTGAGGGTAGTCAGATTCATGTTGTTGATCATGGTGCGGCTTCCTCGGTTAAAGTTGAGGAAGACTCAATTTGGTTGTTTACTGCTGAACGGTTTGAAGGTACTCGTCCATTAACAGTTCAAGCAAGCTATCCAGGTTTTTCTGAAGGTATTGAAGTAGGCGATGAACTTGTTATTGATGGTGGAATGTCATGCTTTGTAGTCATTGAAAAAACTGGAAATGATTTGCATTGTAAGTGCATAGATGCCGGTCTTTTCTTACCTGGAGCCAAATTTAGTTCCTGGAGAGATGGAAAGCTTGTAAGGAGGAATTACAAGCTCCCTACTCTATCAACAAAGGATTGGGCTGACATTAACTTTGGTATAGCTGAGGGAGTTGATTTTTTTGCCTTATCCTTTGTCAATCATGCTGATTCTGTTAAGGATCTAAAGAACTACCTTTCTGGCAAATCAACCAAGCCCATAAAAGTATTGGCAAAGATAGAAAGCTTAGAATCTCTTCATAATCTAGAGGAAATAGTAAAAGCTTCTGATGGAATCATGGTAGCTCGTGGTGACCTCGGAGTCGAAATACCACTTGAACAGATTCCTACAGTCCAGGAGGATATAATTCGCATTTGCAGACAACAAAATAAGTCAGTGATTGTAGCTTCTCAGCTTCTCGAGTCAATGGTTGAGTATCCAACACCAACTCGGGCCGAGGTAGCAGATATTTCTGAAGCAGTCCGACAGTATGCGGATGCTTTGATGTTATCCGGTGAGTCGGCTATCGGTTCATTTGGACAGAAAGCTTTGGCAGTGTTGGATATGACTAGCAGTAGAATGGAATCATGGAGTAGAGAAGAAAACAGACAAAGTCTTCTCAATCACCATAAACTCGGAGCATCATTGCCCGATTGCATCACCGAGCAAATATGCAATTGTGCTGTCGAAATGGCCAACAATCTTGGTGTGGACGCCATCTTTGTTTACACGAAGCACGGACACATGGCGTCATTACTCTCGCGTAACCGTCCCGATCCTCCCATCTTTGCTTTCACCGACGATGAAAATACACGAATGGCTTTAAATTTGCAATGGGGTGTTGTACCACTTCTAGTTGATTTATCAGATGAAGCTGAATCCAACATCTCGAAATCAGTCGATCTTATGAAATCGAAAGGATTGATCAACAAAGGAGATGTTGTTCTAGTGGTCTCAGATGTTGCACCAACAAGAACAACTCCTATGGCTCTCCAATCAATTCAGGTTAAGACCATTATCTAG 1743 0.4223 MATVLKSVATSARNLSLSGQSSYHHSVDLSNRVSNLGFCFKGDEKWKRKHRVKVRAIAEVDVEGLKRSSVALEGSLGLDIVSEGELMVKGFRGLRKTKLVCTVGPACSSLEDLEKMALGGMNVARLNMCHGSREWHRDVIRKIKKLNEEKGFAVSVMIDTEGSQIHVVDHGAASSVKVEEDSIWLFTAERFEGTRPLTVQASYPGFSEGIEVGDELVIDGGMSCFVVIEKTGNDLHCKCIDAGLFLPGAKFSSWRDGKLVRRNYKLPTLSTKDWADINFGIAEGVDFFALSFVNHADSVKDLKNYLSGKSTKPIKVLAKIESLESLHNLEEIVKASDGIMVARGDLGVEIPLEQIPTVQEDIIRICRQQNKSVIVASQLLESMVEYPTPTRAEVADISEAVRQYADALMLSGESAIGSFGQKALAVLDMTSSRMESWSREENRQSLLNHHKLGASLPDCITEQICNCAVEMANNLGVDAIFVYTKHGHMASLLSRNRPDPPIFAFTDDENTRMALNLQWGVVPLLVDLSDEAESNISKSVDLMKSKGLINKGDVVLVVSDVAPTRTTPMALQSIQVKTII 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03255 580 Pfam Pyruvate kinase, alpha/beta domain 462 561 IPR015795 -
Vifa3g03255 580 FunFam Pyruvate kinase 430 570 - -
Vifa3g03255 580 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 88 438 IPR015813 GO:0003824
Vifa3g03255 580 ProSitePatterns Pyruvate kinase active site signature. 314 326 IPR018209 GO:0004743|GO:0006096
Vifa3g03255 580 Pfam Pyruvate kinase, barrel domain 95 436 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 SUPERFAMILY PK C-terminal domain-like 456 563 IPR036918 -
Vifa3g03255 580 Gene3D - 97 426 IPR040442 -
Vifa3g03255 580 Gene3D - 164 266 IPR015806 GO:0004743|GO:0006096
Vifa3g03255 580 NCBIfam pyruvate kinase 95 567 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 SUPERFAMILY PK beta-barrel domain-like 165 246 IPR011037 -
Vifa3g03255 580 PRINTS Pyruvate kinase family signature 152 168 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 PRINTS Pyruvate kinase family signature 393 411 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 PRINTS Pyruvate kinase family signature 316 342 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 PRINTS Pyruvate kinase family signature 412 428 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 PRINTS Pyruvate kinase family signature 285 299 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 PRINTS Pyruvate kinase family signature 343 367 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 PRINTS Pyruvate kinase family signature 368 392 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 FunFam Pyruvate kinase 268 434 - -
Vifa3g03255 580 PANTHER PYRUVATE KINASE 87 560 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa3g03255 580 Gene3D - 427 571 IPR036918 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03255 Vifa-Chr3 932568100 932571450 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03255 K00873 - gmx:100780644 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03255 3 932568100 932571450 Vifa3g03255 3 932568100 932571450 ECH