Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03011 ATGGCTTTCGGTTACAGACTCGACAACTTCATCATCTCTGCGTTTAAACCTAAATACTCAAATGTCCCACTTTCAATTCATCATTCATCATCATCCAATTTTCCATCTCCTTTCAAAGCTCAAAACTTTCCTTTCAGGGTTCGATGTAATTCAGCTATTAGAGCCACTTCATCTTCCTCTTCTCCTCCCACTACCATTGCAGAACCTAATGGCATTAAGATTAACTCTATTCCTACTAAACCTATTGAAGGACAAAAAACTGGTACCAGTGGGCTAAGAAAAAAGGTGAAAGTGTTTATGCAAGAAAATTACCTTGCAAATTGGATTCAGGCATTGTTTAATTCGTTACCGCCGGAGGATTACAAGAACGGATTGTTGGTGTTGGGAGGTGACGGTCGATACTTCAATAAAGAAGCTGCGCAGATAATAATCAAAATTGCTGCGGGAAATGGTGTTGGAAAAATTCTGGTTGGGAAGGAAGGGATATTGTCAACACCAGCCGTTTCTGCTGTGATAAGGAAGAGAGAGGCCAATGGTGGATTTATTATGAGTGCGAGCCATAATCCTGGTGGTCCCGAATACGATTGGGGTATTAAGTTTAATTACAGTAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATTTACGGAAACACTCTATCTATTTCCGAGATAAAGATTGCTGATATTCCCGACGTTGAGTTATCAAACGTTGGAGTTACACAATTCGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTTTCTGATTACCTGGAGTTGTTAGAGACAGTGTTTGATTTTCAGCTAATCAAAAGTCTTATTTCACGGCCAGATTTTAGGTTTACATTTGATGCCATGCATGCAGTTGCCGGTGCTTATGCAACACCGATTTTCATTGATAAACTTGGTGCTAGTCCGGATTCAATTTCAAATGGAATACCTTTGGAAGATTTTGGACATGGTCATCCCGATCCTAATCTAACATATGCAAAGGATCTTGTCAATATTATGTATGCTGAAAACGGACCTGATTTTGGAGCCGCTAGTGATGGCGATGGTGATAGAAATATGATTTTGGGAACGAGTTTCTTTGTAACTCCTTCAGATTCTGTAGCCGTTATTGCAGCCAATGCAAAAGAAGCGATTCCGTACTTTAAGAACAGTATCAAGGGTCTTGCACGATCGATGCCGACAAGCGGTGCTCTAGATAGAGTTGCTGAAAAGTTGAACCTCCCTTTCTTTGAGGTTCCCACTGGTTGGAAATTTTTCGGGAATCTTATGGATGCTGGGAATCTGTCGATTTGCGGGGAAGAGAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAAGACGGAATCTGGGCTGTATTAGCTTGGCTTTCTATTATTGCTCACCGCAACAAAGACACGAAACCAGGGGAGAAATTGATCTCTGTATCTGATGTTGTGAAGGAGCATTGGGCAACCTATGGTAGAAATTTCTTTTCTAGATACGATTACGAGGAATGTGAATCAGATGGCGCAAATAAGATGATAGAGTACCTACGAGAGATCTTGTCTAAGAGCAAGCCCGGTGATAAGTATGGAAGTTATGTCCTCCAGTTTGCTGATGATTTTACATACACTGATCCTGTAGATGGAAGTGTAGTATCAAAACAAGGGGTTCGGTTTGTTTTTACGGATGGTTCAAGAATTATTTATCGTTTATCAGGAACAGGTTCGGCTGGTGCAACCGTTAGAGTGTATATTGAACAGTTTGAACCAGATGTTTCTAAACACGACGTCGATGCTCAAATTGCCTTGAAACCATTAATAGATTTAGCATTATCTGTTTCAAAGCTCAAATACTTCACAGGGAGGGAGAAGCCTACAGTCATCACTTAA 1887 0.4107 MAFGYRLDNFIISAFKPKYSNVPLSIHHSSSSNFPSPFKAQNFPFRVRCNSAIRATSSSSSPPTTIAEPNGIKINSIPTKPIEGQKTGTSGLRKKVKVFMQENYLANWIQALFNSLPPEDYKNGLLVLGGDGRYFNKEAAQIIIKIAAGNGVGKILVGKEGILSTPAVSAVIRKREANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDVELSNVGVTQFGSFSVEVIDPVSDYLELLETVFDFQLIKSLISRPDFRFTFDAMHAVAGAYATPIFIDKLGASPDSISNGIPLEDFGHGHPDPNLTYAKDLVNIMYAENGPDFGAASDGDGDRNMILGTSFFVTPSDSVAVIAANAKEAIPYFKNSIKGLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGNLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDTKPGEKLISVSDVVKEHWATYGRNFFSRYDYEECESDGANKMIEYLREILSKSKPGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKYFTGREKPTVIT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03011 628 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 85 224 IPR005844 GO:0005975|GO:0016868
Vifa3g03011 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 179 193 IPR005841 GO:0005975|GO:0016868
Vifa3g03011 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 279 298 IPR005841 GO:0005975|GO:0016868
Vifa3g03011 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 315 328 IPR005841 GO:0005975|GO:0016868
Vifa3g03011 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 344 359 IPR005841 GO:0005975|GO:0016868
Vifa3g03011 628 SUPERFAMILY Phosphoglucomutase, first 3 domains 256 365 IPR016055 GO:0005975|GO:0016868
Vifa3g03011 628 Gene3D - 474 628 - -
Vifa3g03011 628 Gene3D - 62 261 - -
Vifa3g03011 628 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 72 628 IPR045244 GO:0004614|GO:0005975
Vifa3g03011 628 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 551 603 IPR005843 GO:0016868|GO:0071704
Vifa3g03011 628 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 180 189 IPR016066 GO:0000287
Vifa3g03011 628 SUPERFAMILY Phosphoglucomutase, first 3 domains 74 286 IPR016055 GO:0005975|GO:0016868
Vifa3g03011 628 FunFam Phosphoglucomutase 5 73 261 - -
Vifa3g03011 628 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 368 491 IPR005846 GO:0005975|GO:0016868
Vifa3g03011 628 CDD PGM1 77 628 - -
Vifa3g03011 628 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 257 360 IPR005845 GO:0005975
Vifa3g03011 628 FunFam Phosphoglucomutase, cytoplasmic 1 365 463 - -
Vifa3g03011 628 SUPERFAMILY Phosphoglucomutase, C-terminal domain 493 628 IPR036900 GO:0016868|GO:0071704
Vifa3g03011 628 Gene3D - 365 463 - -
Vifa3g03011 628 FunFam Phosphoglucomutase 5 474 628 - -
Vifa3g03011 628 Gene3D - 262 364 - -
Vifa3g03011 628 FunFam Phosphoglucomutase 5 262 364 - -
Vifa3g03011 628 SUPERFAMILY Phosphoglucomutase, first 3 domains 352 498 IPR016055 GO:0005975|GO:0016868
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03011 Vifa-Chr3 857224898 857229528 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03011 K01835 - gmx:100802730 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03011 3 857224898 857229528 Vifa3g03011 3 857224898 857229528 ECH