Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02999 ATGGGTTGGTTCATGGAACACTTTATAAGGTTATTTCTTGCTGGAAGCTTGTTCTTTAATGGCTTATCTTATTCTCATAAAGCTTCAAAGTACACATTTATTAAAGAAGCAAGAGTTGCTCCTCCAAGCTCAACATATGAGTATATAGTAATTGGTGGAGGATCATGTGGTTGTCCACTAGCAGCAACACTTTCACAAGGTGGAAAAGTTTTACTCCTTGAAAGAGGAGGTTCACCATACAGAAATCCAGAAGAAATCAACATACAAAAATTTGTTCATTCTCTAGCCGACACGAGTCCTTCCTCTTTCTCGCAACAATTCATATCAACCGATGGTGTACTCAACTCGCGCGCTCGCGTTCTAGGAGGCGGTTCTGTCTTGAACGCGGGATTCTACTCGAGGGCTAGCTATAGTTACATAAGAGAGTCTGGTTGGAATGAAAGTTTGGCAGAGAGTTCATATAAATGGGTTGAAAAGAAAGTTGCTTTTGAGCCTCCAATGATGCAATGGCAAACAGCAGTGAGGGATGGTTTACTTGAAGCAGGGGTTTTACCTTACAATGGTTTTACTTTTGATCATTTGTATGGGACTAAGGTTGGAGGGTCAATTTTTGATAAGGAGGGTCATAGACACACTGCTGCTGATTTGTTAGAGTATGCTGATCCAATAAAAATTTCTGTTTATTTGCATGCCACAGTTCAAAAGATACTATTTAGGTATAACCAAGAAAAAAGGAAGCCACAAGCTTATGGAGTGATATTCGAAGATGCATTAGGAGTCATACATAGAGCATACATAGGCTCCAAAATGAAGAATGAAATAATAGTATCAGCTGGTGCAATTGGAAGTCCACAGCTACTAATGCTAAGTGGCATTGGTCCTGCTAACCATCTTAAATCACATGGAATTCAAGTTGTTTTGGATCAGCCTTTCGTCGGTCAAGGGATGGCAGATAATCCGATGAATGTTCTAATTGTTCCTTCTCCTTTACCTGTTGAAGTTTCTCTCATTCAAACAGTTGGAATCACCAGGTCTGGTAGCTTCATCGAAACGGCCAGTGGCTTAGGCTTTGGTCATTCTTGGACTGATCGGCTTCGAGGTATTTTTGAATTTGTGTCAAACCAGAGTGGCCTACCGCCCAAGTTTCCGCCAGAAGCAATGGAGAGTGTTGCAGACACGATTAGATCATTAGCCAATCCGATTCTAAAAGGAGGAGTCATACTCGAAAAGATAATAGGACCGAGATCCTCAGGTCACCTAGAACTTCTAACGACTAATCCCAATGATAATCCATCGGTTACGTTCAACTATTTCAAAGATCCAGAAGACTTGAGAATGTGCGTTGAAGGAATGAAAACGATCATAAATGTGATAAACTCAAAAGCATTCTCAAGATTTCGATATCACAACATGCCTGTACAAGCTCTATTTGACTTGATGTTACAATTATCAGTTAACTTGAGACCGAAGCATCCTAGTGCTGCGTTTTCTTTGGAACAATATTGTATCGACACTGTTTTAACAATTTGGCATTATCATGGTGGTTGCCAACAAGGTAAAGTTGTTGATCATAACTATAACGTCATCGGTGTTGAAGCTCTTAGAGTAATTGATGGTTCCACTTTTCATGGATCACCGGGGACTAATCCTCAAGCTACAGTAATGATGCTCGGAAGGTATATGGGACAAAATATTATAAAGAGAAGACTCTCTCAAGGCAGGAAGTGA 1728 0.4028 MGWFMEHFIRLFLAGSLFFNGLSYSHKASKYTFIKEARVAPPSSTYEYIVIGGGSCGCPLAATLSQGGKVLLLERGGSPYRNPEEINIQKFVHSLADTSPSSFSQQFISTDGVLNSRARVLGGGSVLNAGFYSRASYSYIRESGWNESLAESSYKWVEKKVAFEPPMMQWQTAVRDGLLEAGVLPYNGFTFDHLYGTKVGGSIFDKEGHRHTAADLLEYADPIKISVYLHATVQKILFRYNQEKRKPQAYGVIFEDALGVIHRAYIGSKMKNEIIVSAGAIGSPQLLMLSGIGPANHLKSHGIQVVLDQPFVGQGMADNPMNVLIVPSPLPVEVSLIQTVGITRSGSFIETASGLGFGHSWTDRLRGIFEFVSNQSGLPPKFPPEAMESVADTIRSLANPILKGGVILEKIIGPRSSGHLELLTTNPNDNPSVTFNYFKDPEDLRMCVEGMKTIINVINSKAFSRFRYHNMPVQALFDLMLQLSVNLRPKHPSAAFSLEQYCIDTVLTIWHYHGGCQQGKVVDHNYNVIGVEALRVIDGSTFHGSPGTNPQATVMMLGRYMGQNIIKRRLSQGRK 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02999 575 Pfam GMC oxidoreductase 414 559 IPR007867 GO:0016614
Vifa3g02999 575 Gene3D - 46 558 IPR036188 -
Vifa3g02999 575 PIRSF Alcohol_oxidase 24 575 IPR012132 GO:0050660
Vifa3g02999 575 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Vifa3g02999 575 Pfam GMC oxidoreductase 46 320 IPR000172 GO:0016614|GO:0050660
Vifa3g02999 575 Gene3D - 163 508 - -
Vifa3g02999 575 PANTHER OSJNBA0019K04.7 PROTEIN 19 570 - -
Vifa3g02999 575 SUPERFAMILY FAD-linked reductases, C-terminal domain 316 515 - -
Vifa3g02999 575 SUPERFAMILY FAD/NAD(P)-binding domain 39 569 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02999 Vifa-Chr3 849943653 849945814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02999 8 569 Miscellaneous Gene Families AT5G51950 59.331 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02999 - - gmx:100780453 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02999 3 849943653 849945814 Vifa3g02999 3 849943653 849945814 ECH