Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02944 ATGGGAAAGCAAAAACAACAAGTAATCTCCCGCTTCTTCGCCCCAAAACCCAAACCCCCATCATCAACCACCGACCCCCCTCCACCCTCACCCTCTCCTCGTCCCACTCCTCCCACTCCCAAAATCTCCACAACCGTCTCTTTCTCTCCCGCCAAACGCCGCCTCATCTCTCAACTAAAATCATCCCCCAACAAACAACCCAGACTATCTGTACCCTCTCCACCCAATCCCTCCCTCCACCAACGCTTCCTTCAAAAGCTTCTAGAACCTTCTCCTCCGGACCCACAGCTTCCTTCATCTTCCCAACCGGTAAAGTTTACTCCTTTAGAGGAACAGGTAGTGGAACTCAAAGCTAAACACCCTGATGTTCTTTTGATGATTGAAGTTGGTTACAAGTATCGGTTTTTCGGCCAAGATGCTGAGACTGCTGCTAGAGTTTTGGGTATATATGCTCACATGAATCATAATTTTTTAACTGCTAGCATACCAACTGTTCGATTACATGTCCATGTGAGGAGGCTTGTGAGTGCAGGGTATAAAGTTGGTGTTGTTAAGCAGACTGAGACTGCTTCTATTAAGGCCCATGGTTTGAACCGGGGTGGTCCGTTTTGCAGAGGCTTGTCGGCGTTGTATACGAAGGCGACGTTGGAGGCGGCTCAGGATTTGGGAGGAGGGGAAGATGAGTGTGGGTCAGTGAGTAACTACTTGCTGTGTGTTGTGGAGAAGAGTATTTTGGGTGAGAGGAAATCTAAGTCTGGTGTGGAGGGTGGGTTTGATGTGAGAATTGGGATTGTTGGTGTGGAGATATCGACGGGAGATGTTGTTTATGGAGAGTTTGATGATAATTTTTTGAGGAGTGAACTTGAGGCTGTTGTTGTTAGCTTGTCTCCTGCTGAGTTGCTTCTTGGGGACCCTCTTTCCAAACAAACTGAGAAGTTATTATTGGCTTTTGCTGGACCCTCCTCAAATGCTCGTGTGGAGCGTGCCTCACGAGATTGCCTCACTGATGGAGGCGCCTTAGCTGAAGTTATGACCTTGTATGAAAACATGTGTGTTGACAGTCCATCAGATTCAATGCAAGGCAGTGAATTGACTGAGCATAAAAGTCAGCAGATGGAAGTCAAGGAGGCCATGAACCTTCCAGATTTGGTTGTCGAAGCTCTAGCTTTAACTATTCGCCATTTGAAGGGATTTGGTTTTGAAAGAATTCTGTGCTCAGGTGCTTTAAGGCCCTTAGCAAGCAATACTGAAATGAATCTCTCAGCCAATGCACTACTACAACTGGAGGTTTTACAAAATAACAGCGATGGATCTGATAGTGGTTCCTTGCTACAAACTATGAATCACACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTAACACACCCACTGTGTGATCAAACCATGATTTCTGCCCGTCTTAATGCCGTATCTGAAATCGCAGAGTCCATGGGAACTTGTAATGGCATGAAGAATCTTGGATGTTCTGAGGAAGATTCTGAAGTAACGATTGTGCAGCCTGAGTTAGCGAACATACTTTCATTGGTTTTGAAAGCCCTGGGTCGGGCACCTGATATACAGCGTGGGATTACAAGAATTTTCCATTGCACTGCTACCCCATCTGAGTTTATTTCCATTATTCAAGCTATTTTGTCTGCTGGAAAACGGCTTCAGCAACTGAACATAGGAGAGGGGGATAACAATAATAATAATAATAAATTGTACTCTGGTTTGTTAAAGAAGTTAATTTCAACCGCTTCCTCTGCAAATGTTATTGGTAAAGCAGCAAAATTGTTGTCATCTTTAAATAAAGACTCTGCTTATCAAGGAGATCTGACAAATATGATCGTTGCAACTGAGGGACAATTTCCAGAGGTATTTACAGCTCGAAAGGCTTTTCAGATGGCATTGGAACAATTAAATTCGTTGATTGGCTTGTACCGCAAACGGCTTGGAATGCGAAATTTGGAATATATGTCTGTTTCTGGTGTAACTCACTTGATAGAGTTATCATCTGATGTAAAAGTTCCTTCAAATTGGGTTAAGATAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGATGAGTTATCATTAGCAAAAGAGAAGCTTACTGTTGCCTGCCGAGCTGCATGGGACAGCTTTCTGAGGGACTTCGGTAAACATTATGCTGAGTTCCAAGCTTCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTCGCCACTCTTTCAAGAAATAAGGGTTATGTCCGTCCTGGTTTTGTAGATGATGATGAGCCTGTTCAGATACAATTTTGTTCTGGTAGACATCCGGTTTTGGAGACCACCTTGCAAAATGATTTTGTCCCAAACGATACAAATTTGCATGCTGATAGAGAGTACAGTCAGATTGTCACTGGACCCAATATGGGAGGGAAAAGCTGCTATGTTCGCCAAGTGGCTCTGATCACTCTCATGGCTCAGGTTGGCTCCTATGTTCCAGCATCATCAGCGAAATTACATGTCCTTGATGGGATCTACACTCGGATGGGTGCTTCTGACAGTATTCAGTTAGGGAGAAGCACTTTCCTAGAAGAATTGAGTGAGACTTCACACATACTTCATAGATGTACAGAACGTTCACTGGTTATACTCGATGAGCTTGGGAGAGGCTCTGTAGCAGCATATCACATGTCACATATGACTGCACATGATGATTCAAGTAAAAACTCCAATGATCATGAAGATGTCACTTATTTATATAAGCTTGTACATGGTGTTTCGGAGAGGAGTTTTGGTTTTAAGGTTGCCCATCTTGCACAGTTACCACCACATTGCGTTAGGCGAGGTGTTGTCATGGCTTCCAAATTAGAATCACTAGTAAACAGCAGATTACATGGTAGATCAGGAAATGAGCTATTGTTGTTGGAAGCACCTGTTATTGATCAAGAGCAAGAACCACATGATTGTCAAAGTCAAGACTTTGACAGTGCATTTAAGGAATTCTATTCAAACTTAAAAGCTGCAACACTAGATGATGACCATGCAAAAAGCTTTCAACTTTTAGAGAATGCTAGAAGCATTGCAAAGACATTAATTAGCAGGTCAATGCAGTTGGTATAA 3138 0.4321 MGKQKQQVISRFFAPKPKPPSSTTDPPPPSPSPRPTPPTPKISTTVSFSPAKRRLISQLKSSPNKQPRLSVPSPPNPSLHQRFLQKLLEPSPPDPQLPSSSQPVKFTPLEEQVVELKAKHPDVLLMIEVGYKYRFFGQDAETAARVLGIYAHMNHNFLTASIPTVRLHVHVRRLVSAGYKVGVVKQTETASIKAHGLNRGGPFCRGLSALYTKATLEAAQDLGGGEDECGSVSNYLLCVVEKSILGERKSKSGVEGGFDVRIGIVGVEISTGDVVYGEFDDNFLRSELEAVVVSLSPAELLLGDPLSKQTEKLLLAFAGPSSNARVERASRDCLTDGGALAEVMTLYENMCVDSPSDSMQGSELTEHKSQQMEVKEAMNLPDLVVEALALTIRHLKGFGFERILCSGALRPLASNTEMNLSANALLQLEVLQNNSDGSDSGSLLQTMNHTLTIFGSRLLRHWVTHPLCDQTMISARLNAVSEIAESMGTCNGMKNLGCSEEDSEVTIVQPELANILSLVLKALGRAPDIQRGITRIFHCTATPSEFISIIQAILSAGKRLQQLNIGEGDNNNNNNKLYSGLLKKLISTASSANVIGKAAKLLSSLNKDSAYQGDLTNMIVATEGQFPEVFTARKAFQMALEQLNSLIGLYRKRLGMRNLEYMSVSGVTHLIELSSDVKVPSNWVKINSTKKTIRYHPPEVVTALDELSLAKEKLTVACRAAWDSFLRDFGKHYAEFQASVQALAALDCLHSLATLSRNKGYVRPGFVDDDEPVQIQFCSGRHPVLETTLQNDFVPNDTNLHADREYSQIVTGPNMGGKSCYVRQVALITLMAQVGSYVPASSAKLHVLDGIYTRMGASDSIQLGRSTFLEELSETSHILHRCTERSLVILDELGRGSVAAYHMSHMTAHDDSSKNSNDHEDVTYLYKLVHGVSERSFGFKVAHLAQLPPHCVRRGVVMASKLESLVNSRLHGRSGNELLLLEAPVIDQEQEPHDCQSQDFDSAFKEFYSNLKAATLDDDHAKSFQLLENARSIAKTLISRSMQLV 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02944 1045 SMART DNAend 438 788 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vifa3g02944 1045 MobiDBLite consensus disorder prediction 41 67 - -
Vifa3g02944 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 964 IPR027417 -
Vifa3g02944 1045 MobiDBLite consensus disorder prediction 1 79 - -
Vifa3g02944 1045 FunFam DNA mismatch repair protein Msh3 603 729 - -
Vifa3g02944 1045 PIRSF Msh6 897 1017 IPR017261 GO:0006298|GO:0030983
Vifa3g02944 1045 PIRSF Msh6 96 901 IPR017261 GO:0006298|GO:0030983
Vifa3g02944 1045 SMART mutATP5 805 960 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vifa3g02944 1045 Pfam MutS domain III 423 753 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vifa3g02944 1045 FunFam DNA mismatch repair protein 97 227 - -
Vifa3g02944 1045 Gene3D MutS, connector domain 230 417 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vifa3g02944 1045 SUPERFAMILY DNA repair protein MutS, domain III 422 758 IPR036187 -
Vifa3g02944 1045 Gene3D DNA repair protein MutS, domain I 98 224 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vifa3g02944 1045 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 111 896 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vifa3g02944 1045 Pfam MutS domain I 107 217 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vifa3g02944 1045 Pfam MutS domain V 808 899 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vifa3g02944 1045 Gene3D - 603 729 - -
Vifa3g02944 1045 SUPERFAMILY DNA repair protein MutS, domain I 100 215 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vifa3g02944 1045 MobiDBLite consensus disorder prediction 19 40 - -
Vifa3g02944 1045 Gene3D - 420 754 - -
Vifa3g02944 1045 Gene3D - 898 982 IPR027417 -
Vifa3g02944 1045 Gene3D - 761 897 IPR027417 -
Vifa3g02944 1045 FunFam DNA mismatch repair protein 230 415 - -
Vifa3g02944 1045 Pfam MutS domain II 234 311 IPR007860 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02944 Vifa-Chr3 827611273 827619853 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02944 K08736 - gmx:100789883 1457.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02944 3 827611273 827619853 Vifa3g02944 3 827611273 827619853 ECH