Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02929 ATGAATTCAATAGCCCTTTTAGGTCTAAGGAAAAGGGTAGTCCACAAAATTTCCCATTTTTTTGTTATTCAGCAGAGATTATGTTGCCACACATTTCAAGGTAATAATGGGTTTGAATTTGAATGCATTGAGGAGCCTTTGAAAAAAATAGTTTCTGATTTTGATTCTACTTTGGATGAAAGGATCAATTTTAATGACGATTCAACTTCAAGCTGTGATCAAAAGCCCTTTTCACTTAGAAAAGGGTTCTTAGATTCTGTGAAGTTAGATGCTAAGAGGGCCCTTGAGGTTCTTAGACAAGATGGTCCTGGTCTTGATGCTAGGTTGATTTTAGAGGAGTGGAGTATAAGACCTTCGGGGATTCTTGTTCGAGAGGTTCTCTTTGGAATTTTGAAGAGCATTAATAGTGAGAATAAGACCAGGTGTGCAAAGTTGGCTTATAAGTTTTTCGTGTGGTGTAGTCAGCAAGAGGATTATCGGCACACTGCGAATGCTTATCATTTGTTAATGAGCATATATGCTGAGTGCCAAGAGTTTAGGGCGTTGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGCTATCCGGCTACTGCACGTACTTTCAATGTTTTGGTTCGGACTTGTGGAGAGGCGGGGTTGGCTAAGACCTTGGTGGAGAGGTTTATTAAATCGAAGAACTTTAGCTATAGACCTTTTAAGCATTCCTACAATGCAATTCTACATAGTTTTCTTGTATTAAACCAATACAAATTGATTGAGTGGGTTTATGAGCAGATGTTGCTTGATGGTTTTTCATCAGATGTTTTGACTTATAATATTGTCATGTATGCCAAGTATAGACTTGGAAAGGTGGATCAGTTCCACATACTGCTCGATGAGATGGGTAGAAATGGATTTTCGCCGGATTTCCATACCTTCAACATTCTTCTTCATGCTCTTGGTAAAGGGGACAAACCACTTGCTGCTCTTAATCTTTTGAATCACATGAGAGAAACAGGTATAGAGCCAACGGTACTTCATTTTACCACATTGATAGATGGACTCAGCAGAGCTGGGAATTTGGATGCTTGCAAGTATTTTTTCGATGAAATGACAAAGAACGGGTGCATGCCAGATGTGGTGGCTTACACTGTTATGATAACGGGATACGTAGTGGCTGGTGAGCTTGAGAAAGCACAGGAAATGTTTCAAGAGATGCTTTCCAAGGAGCAAGTACCAAATGTTTTTACATACAATTCCATGATTCGAGGATTATGTATGGCAGGAAAATTTGATGAAGCACTCTCAATGTTGAAGGAAATGGGAAGGAAAGGTTGTAGTCCAAACTCTGTTGTCTATATTACATTAGTGGATTGTTTGCGGAATGCCGGAAGGGTTACTGATGCTCGTGAGGTGATAAGTCAAATGATGGAGACAGGGAAGTATGCCCACTTACTTTCAAGATTTAAAGGGTTTAAGATGTAG 1464 0.3962 MNSIALLGLRKRVVHKISHFFVIQQRLCCHTFQGNNGFEFECIEEPLKKIVSDFDSTLDERINFNDDSTSSCDQKPFSLRKGFLDSVKLDAKRALEVLRQDGPGLDARLILEEWSIRPSGILVREVLFGILKSINSENKTRCAKLAYKFFVWCSQQEDYRHTANAYHLLMSIYAECQEFRALWRLVDEMIEKGYPATARTFNVLVRTCGEAGLAKTLVERFIKSKNFSYRPFKHSYNAILHSFLVLNQYKLIEWVYEQMLLDGFSSDVLTYNIVMYAKYRLGKVDQFHILLDEMGRNGFSPDFHTFNILLHALGKGDKPLAALNLLNHMRETGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMTKNGCMPDVVAYTVMITGYVVAGELEKAQEMFQEMLSKEQVPNVFTYNSMIRGLCMAGKFDEALSMLKEMGRKGCSPNSVVYITLVDCLRNAGRVTDAREVISQMMETGKYAHLLSRFKGFKM 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02929 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Vifa3g02929 487 Pfam PPR repeat 333 365 IPR002885 -
Vifa3g02929 487 Pfam PPR repeat 437 469 IPR002885 -
Vifa3g02929 487 Gene3D Tetratricopeptide repeat domain 403 474 IPR011990 GO:0005515
Vifa3g02929 487 Gene3D Tetratricopeptide repeat domain 330 402 IPR011990 GO:0005515
Vifa3g02929 487 Gene3D Tetratricopeptide repeat domain 250 329 IPR011990 GO:0005515
Vifa3g02929 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Vifa3g02929 487 SUPERFAMILY TPR-like 372 472 IPR011990 GO:0005515
Vifa3g02929 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Vifa3g02929 487 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 138 473 - -
Vifa3g02929 487 NCBIfam pentatricopeptide repeat 409 443 IPR002885 -
Vifa3g02929 487 NCBIfam pentatricopeptide repeat 444 473 IPR002885 -
Vifa3g02929 487 NCBIfam pentatricopeptide repeat 374 408 IPR002885 -
Vifa3g02929 487 NCBIfam pentatricopeptide repeat 304 338 IPR002885 -
Vifa3g02929 487 NCBIfam pentatricopeptide repeat 341 373 IPR002885 -
Vifa3g02929 487 Pfam PPR repeat 235 264 IPR002885 -
Vifa3g02929 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vifa3g02929 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Vifa3g02929 487 Gene3D Tetratricopeptide repeat domain 120 243 IPR011990 GO:0005515
Vifa3g02929 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vifa3g02929 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Vifa3g02929 487 Pfam PPR repeat family 371 419 IPR002885 -
Vifa3g02929 487 Pfam PPR repeat family 267 314 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02929 157 473 Glycosyltransferase AT1G05670 27.987 9.59e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02929 - - ccaj:109794849 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02929 3 822857349 822858812 Vifa3g02929 3 822857349 822858812 ECH