Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02894 ATGTGGCCCTTCAACAGAAAAGGGGTTTCTGGATTTTCGTCGAGTTCAACTGCTGAGCAAGTTACTCATGGAATCGATGCTACTGGCCTCACTGCTATTGTCACTGGAGCATCTAGTGGTATTGGTGTTGAGACTACGCGTGTTCTTGCTTTACATGGTGTTCATGTGATTATGGCGGTTAGAAATATGGCTGCTGCTAGAGATGTCAAAGAAGCAATACTCAAGGAGATTCCCTCAGCTAAAATTGATGTCATGGAGTTAGATCTTAGTTCAATGGCATCTGTCAAGAAATTTGCATCAGAGTTTGTTTCATCTGGTCTTCCATTGAACATCTTGATAAACAACGCAGGAGTTATGGCATGCCCTTTCATGCTGTCTCAGGACAACATTGAACAACAATTTGCCACAAACTACTTAGGTCATTTTCTCTTGACACATCTTTTGTTGGACACTATGAAGAAAACAACACTTGAAAGTAACAAAGAAGGAAGAATTGTTAATGTCTCCTCAGAGGCTCACAGAGTTGCATATTCTGAAGGAATCCGTTTTGACAAAATCAACGAACAATCGAGTTACAGCAACTGGCGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCAAAACGTCTCAAAGATGAGGGAGTGAATATCATTGCAAATTCTCTTCATCCAGGAGCCATTGTGACCAAACTTTATCGCCATACCAGTGCAATCAACGGTATAGTAAATGCAGTTGGCAGACTTGTGATGAAAAATGCTCAGCAGGGAGCAGCTACAACATGCTATGTAGCATTACACCCACAAGTGAAGGGGGTAAGTGGTGAATATTTTTCAGACAGTAATCTGTGCAAAACAACCCCACATGGGAAGGATGCTGATTTGGCTAAGCAACTCTGGGATTTCAGTATCAATTTGGTTAAGCAGAAATAG 948 0.4135 MWPFNRKGVSGFSSSSTAEQVTHGIDATGLTAIVTGASSGIGVETTRVLALHGVHVIMAVRNMAAARDVKEAILKEIPSAKIDVMELDLSSMASVKKFASEFVSSGLPLNILINNAGVMACPFMLSQDNIEQQFATNYLGHFLLTHLLLDTMKKTTLESNKEGRIVNVSSEAHRVAYSEGIRFDKINEQSSYSNWRAYGQSKLANILHANELAKRLKDEGVNIIANSLHPGAIVTKLYRHTSAINGIVNAVGRLVMKNAQQGAATTCYVALHPQVKGVSGEYFSDSNLCKTTPHGKDADLAKQLWDFSINLVKQK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02894 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Vifa3g02894 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vifa3g02894 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vifa3g02894 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vifa3g02894 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vifa3g02894 315 Pfam short chain dehydrogenase 31 178 IPR002347 -
Vifa3g02894 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Vifa3g02894 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Vifa3g02894 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Vifa3g02894 315 PANTHER RETINOL DEHYDROGENASE 10 313 - -
Vifa3g02894 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 291 IPR036291 -
Vifa3g02894 315 CDD retinol-DH_like_SDR_c_like 29 305 - -
Vifa3g02894 315 Gene3D - 20 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02894 Vifa-Chr3 813576872 813605807 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02894 29 172 Lipid Metabolism Gene Families AT1G24470 31.944 1.42e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02894 - - gmx:100796920 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02894 3 813576872 813605807 Vifa3g02894 3 813576872 813605807 ECH