Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02888 ATGGATTCGGTCGAAAAGAGGAACGAAGAGGATTGGGAGTTTACCGATAAGAGGAAGCAGAGGTCAAGGAAGCATGTGAACGGTGATGAGGCGGAAGGTGAGGTTGACGGTGAAGGCTCTGACGGAAGCGGGAGAAGGAAGCGTTCTGGGAAGGGGGATGGGGATGATTACGATTCACGGTCGAAGGCGGCAAAGAAGAGATTAGAGGAGAATACATTGGAGAAGTTGAGTAGTTTTTATGAGGATGGGGAGTTGGATGGTGGGGAGAAGGGGAGGAATGCTCAGAGAGGGAAGGAGGATTTTAGGTTATCGGAGAAGAGTGAAAGTGGACGGGAGTCGAGAGAGTCAAGAGAGAAGAGCCGTGGGTCTTCTGAACAGGTGAAGAGTTCTAGAAGGAAGTGGGATGAAGTTGATGTTGTTAATGTGAAGAAAGTGCAGGATAGTGTTTATGAGAAAAGTGATTTGAAGAGTTCTAAGGTTTCTGATGGGAAGCGGAGTGAGTCTAGGGAGAGGAGTGGATCTGGTAGAAATGAACATGGGGAGAGTAAGGTTTTTGGGAGTGATAGCAAGGTTGTTAAATCTGGGGGGAAAGAAGATAGAAGAAGTGATTCTGAGAGAAGTAAGAGTAAAGGGAAGGTGGAAACGCCTGATGAAAGGGTTGAGAAGCCTAGGCGTCATAGGACGCCGACTGGTTTTGATGTGGCTGAAACTGGGGAGAAGTTGGGAAATGCAGATGAAGATGGTAATGCGCGGGTTAGGGATAAAACTGTCAAAGAAACTGGGAATTTGACTAGATCTAGGACGCCCGAGAAGAGTGGAAAACGCCATCAAGATTCGGAGGGTTCGGAGATGGATAATGAGAAAAGTGGTAGTTTTAAAAGGAAGGAACTTGAGAGTGATAGTTATAGAGATGATAGGTCCAAAGGAAAAGATGAAATGTGGAGTGATAGGAGGAAAGATAGGGAAAGTTCTAAAGATAATTGGAAAAGGAGGCAGCAGGGTAATACTGACAGAGATTCAAAGAATGAGGATGGTGCTTTTGATCACAGCAGAGAATGGGAGTTGCCCAGACACGGTTATGATAGGATGGACAACGAAAGGCATCACAGCCGGTTAGGTGGTAGAAAAGATGCACTCAGGGGGGAAGCTGTGAAAACAACAACGAAGTATGGAATTTCAAATGATAATTATGATGTGATAGAGATCCAGCCAAAGTTTGTTGACTATGGAAAAGCAGACTCTGTATCCAACCTTAGCAAGAGAACTGATGCTAATCAACAGTACAATTCTAAATCAGGAGGAAATCATGAAGAACGGTCACATCATCCGGAAGAAAGAGCAAGAAAGAGTGATTTATCTGGTTCTGGGACACCCGGTGAAGATCAGAAGGAAAGATATGCTGATGATGACTATGATTCTTATGGGGGAAGAGGAAGAGGTCAGAAAAGTGTTGTAACTAATCGCAGTACTGGTGGCTTGCAGTCTCAATATGGTAATCTGGATTCTGGATCATTTAACAGAGGGGGTCCACAAGGTATAAAAGGGAACAGGGTTGGTAGAGGAGGAAGGATTAGGCCTCCTGGGAGAGACAACCAGCAGGTTGGAATGCCATTACCAATGATGGGATCACCCTATGGACCTCTTGGCATGCCTCCGCCCGGACCGATGCAGACTCTTTCCCATGGTATGTCACCCGGTCCTCCAATGTCCCCTGGAGTCTTCATGTCACCATTTAACCCGGCTGTTTGGCCTGGACCCCGAGGTGTTGACATGAATATAATGGGTGTTCCACCCGTAGTGTCTCCTGTACCTCCAGGTCCAAGATTTAATACTTCTAATATGGGAAACCAACCGAATTCTGCAATGTATTATAACCAATCAGGCCATGGACGGGGGATTCCCCCAAGCATTTCTAGTCCTGGTTTCAATCATACTGGACCAATGGGGAGAGGAGCACCACCTGATAAAGCTCAAGGGGGATGGGCTCCACCTAAAAGTAGTGGAAATATGGGTAAAGCTCCTTCCAGAGGTGAGCAGAATGATTATTCTCAAAACTTTGTTGACACTGGTATGCGACCTCAGAATTTCATCAGGGAGCTTGAACTGACAAATGTTGTAGAGGACTATCCTAAGCTTAGGGAGCTTATACAGAAAAAGGATGAGATTGTGGAAAAATCTGCATCCACTCCCATGTATCACAAGTGTAATCTGAAAGAGTTTGAACTGGCTCCAGAGTTCTTTGGGACCAAGTTTGATGTCATTCTTGTGGATCCCCCATGGGAGGAGTATGCACATCGAGCCCCTGGTGTTGCTGAACACACGGAGTGCTGGACATTTGAAGAAATAATGAATCTCAAGATTGAGGCTATAGCAGATACTCCTTCTTTCATCTTCCTTTGGGTTGGTGACGGTGTAGGCCTTGAACAAGGCCGTCAATGTCTAAAGAAGTGGGGATTTCGTAGGTGTGAAGATATATGTTGGGTGAAGACAAATAAAAGTACCGCAACTCCAGGGCTGCGGCATGATTCACATACTTTATTTCAACATTCAAAGGAACACTGCTTGATGGGCATAAAAGGAACGGTTCGTCGAAGTACTGATGGGCATATTATTCATGCCAACATTGACACGGATGTAATTATTGCTGAAGAACCTCCTTATGGTTCAACTCAAAAGCCTGAAGATATGTATAGGATTGTTGAACACTTTGCCCTTGGAAGGAGAAGACTTGAACTGTTTGGTGAAGACCATAATATCCGGTCCGGCTGGCTCACTCTTGGTAAAGAGCTGTCGTCTTCAAATTTTAGTAAGGAGGCATATGTCAAGAATTTTGGTGACAAAGATGGGAAGGTTTGGCAGGGTGGTGGAGGAAGAAACCCACCTCCGGAGGCACCTCATCTGGTGGTGACTACTCCTGATATAGAGGCTCTTAGGCCAAAGTCCCCAATGAAGAACCAGCAACAAATGCAGCAGCAGCAGCAGCAATCAGTATCCATTTCTTTGACGCCGGGTAACGCATCAAACAGAAGGCCTGGGAATTCACCGCAGAATCCAAGTGCACTTGGTATCAATCAAGATGCCTCTAGTTCAAACCCATCTACACCAGCTCCTTGGGCTTCTTCTCCTATGGAGAACTTTAAGGGTCGTGAAGGCTCTGTATTGCCTTCAGATGATAAAGTATTTGATATGTATGGAGGGTTTAATGGACCACCACCCCCAGGCTATCTAGATTTTGAATCATTCAGACAAATGAATATGTTGTAG 3264 0.455 MDSVEKRNEEDWEFTDKRKQRSRKHVNGDEAEGEVDGEGSDGSGRRKRSGKGDGDDYDSRSKAAKKRLEENTLEKLSSFYEDGELDGGEKGRNAQRGKEDFRLSEKSESGRESRESREKSRGSSEQVKSSRRKWDEVDVVNVKKVQDSVYEKSDLKSSKVSDGKRSESRERSGSGRNEHGESKVFGSDSKVVKSGGKEDRRSDSERSKSKGKVETPDERVEKPRRHRTPTGFDVAETGEKLGNADEDGNARVRDKTVKETGNLTRSRTPEKSGKRHQDSEGSEMDNEKSGSFKRKELESDSYRDDRSKGKDEMWSDRRKDRESSKDNWKRRQQGNTDRDSKNEDGAFDHSREWELPRHGYDRMDNERHHSRLGGRKDALRGEAVKTTTKYGISNDNYDVIEIQPKFVDYGKADSVSNLSKRTDANQQYNSKSGGNHEERSHHPEERARKSDLSGSGTPGEDQKERYADDDYDSYGGRGRGQKSVVTNRSTGGLQSQYGNLDSGSFNRGGPQGIKGNRVGRGGRIRPPGRDNQQVGMPLPMMGSPYGPLGMPPPGPMQTLSHGMSPGPPMSPGVFMSPFNPAVWPGPRGVDMNIMGVPPVVSPVPPGPRFNTSNMGNQPNSAMYYNQSGHGRGIPPSISSPGFNHTGPMGRGAPPDKAQGGWAPPKSSGNMGKAPSRGEQNDYSQNFVDTGMRPQNFIRELELTNVVEDYPKLRELIQKKDEIVEKSASTPMYHKCNLKEFELAPEFFGTKFDVILVDPPWEEYAHRAPGVAEHTECWTFEEIMNLKIEAIADTPSFIFLWVGDGVGLEQGRQCLKKWGFRRCEDICWVKTNKSTATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDTDVIIAEEPPYGSTQKPEDMYRIVEHFALGRRRLELFGEDHNIRSGWLTLGKELSSSNFSKEAYVKNFGDKDGKVWQGGGGRNPPPEAPHLVVTTPDIEALRPKSPMKNQQQMQQQQQQSVSISLTPGNASNRRPGNSPQNPSALGINQDASSSNPSTPAPWASSPMENFKGREGSVLPSDDKVFDMYGGFNGPPPPGYLDFESFRQMNML 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 415 537 - -
Vifa3g02888 1087 Pfam MT-A70 751 929 IPR007757 -
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 611 683 - -
Vifa3g02888 1087 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 747 898 IPR029063 -
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 461 476 - -
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 480 506 - -
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 415 433 - -
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 980 1057 - -
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 434 451 - -
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 981 1040 - -
Vifa3g02888 1087 PANTHER N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT 41 1049 IPR045123 -
Vifa3g02888 1087 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 754 760 IPR002052 GO:0003676|GO:0008168|GO:0032259
Vifa3g02888 1087 ProSiteProfiles MT-A70-like family profile. 710 949 IPR007757 -
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 611 626 - -
Vifa3g02888 1087 ProSiteProfiles mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase-like (MT-A70-like) family profile. 529 1077 - -
Vifa3g02888 1087 MobiDBLite consensus disorder prediction 1 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02888 Vifa-Chr3 811294827 811303438 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02888 K23960 - gmx:100790586 1543.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02888 3 811294827 811303438 Vifa3g02888 3 811294827 811303438 ECH