Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02870 ATGAAGATTTCAAGATTTGAAAATTTCTATGTTATTGGTGTGATTTCTATAGTTCTGATTTTGGGATCAGTAGTAGAATGTGGAATACCAAGTAATGAATTGAACGGTTTCAATTATTCTGCAATCAACTGCAGAAAACACAGTGCAGTTTTGACAGATTTTGGTGGTGTTGGTGATGGAAAAACCTCTAACACAAAGGCTTTTAATTCAGCAATAACTAACCTAAGCCAATATGCAAATGATGGTGGTGCACAGCTTATTGTTCCACCAGGTAAATGGTTAACCGGAAGCTTCAACCTCACAAGCCATTTCACTCTTTTTCTCCAAAAAGATGCTGTCATTCTTGCATCTCAGGATGAATCAGAATGGCCTCAACTTCCTGTTTTCCCATCTTATGGAAGAAGTAAAGATGCACCTGCTGGATGGTCTAGCAGTCTCATATTTGGAACTAATCTCACTGATGTGGTAATTACTGGTAACAATGGGACAATTGATGGACAAGGATCATATTGGTGGAACAAGTTCCACAAGCATCAATTGAAAATTACTAGACCTAACATGATTGATCTCATGTACTCTAATCAAATTCAAATATCTAATCTTACTTTGGTTAATTCCCCGGCTTGGTTTGTCCATCCAATTTACAGCAGTGACATAATTATAAATGGACTCACCATCCTTGCACCAATTGACTCTCCAAACACAGATGGCATAGACCCCGATTCAAGTACAAATGTTAGGATTGAAGACAACTATATTGTCTCTGGTGATGATTGCATTGCCATAAAAAGTGGATGGGATGAGTATGGAATCAAAGTTGGAAAGCCATCTGAACAAATTATCATAAGAAGGTTAACATGTATATCACCTGATAGTGCTATGGTTGCATTAGGGAGTGAAATGTCAGGTGGAATCCAAGATGTTAGAGTTGAAGATGTAACTGCTATCAACACTGAATCGGCTGTTAGAATCAAAACAGCCGTTGGTAGAGGCGCATTCGTGAAGGACATTTTTGTTAAAAGAATGAACTTGAAGACAATGAAATATGTGTTTTGGATGACAGGTGATTATAAATCACACCCTGACGAGGGATATGACCCAAAAGCATTGCCTAAAATTAGTGGAATTAATTATAGAGATGTTACTGCTAAGAATGTGACATATGCGGCAAAACTAGAAGGGATTTCAAATGATCCTTTTACAGGAATATGTCTTTCTAATGTGACTATTGATATGAGTGCACAGAAGAAGCTTCCATGGAATTGCACAGACGTTGCAGGAGTTACAAGTAATGTGAGCCCTAAACCTTGTGAGTTGCTGCCAGAGAAAGAGAGGCTGGACTGTCCTTTTCCCAGTGACAAACTGCCCATTGAAAATGTTCGGTTCAAGACCTGTACCTTTCAAAGTAGTGTCTTCTCATAA 1422 0.3833 MKISRFENFYVIGVISIVLILGSVVECGIPSNELNGFNYSAINCRKHSAVLTDFGGVGDGKTSNTKAFNSAITNLSQYANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKDAVILASQDESEWPQLPVFPSYGRSKDAPAGWSSSLIFGTNLTDVVITGNNGTIDGQGSYWWNKFHKHQLKITRPNMIDLMYSNQIQISNLTLVNSPAWFVHPIYSSDIIINGLTILAPIDSPNTDGIDPDSSTNVRIEDNYIVSGDDCIAIKSGWDEYGIKVGKPSEQIIIRRLTCISPDSAMVALGSEMSGGIQDVRVEDVTAINTESAVRIKTAVGRGAFVKDIFVKRMNLKTMKYVFWMTGDYKSHPDEGYDPKALPKISGINYRDVTAKNVTYAAKLEGISNDPFTGICLSNVTIDMSAQKKLPWNCTDVAGVTSNVSPKPCELLPEKERLDCPFPSDKLPIENVRFKTCTFQSSVFS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02870 473 Pfam Glycosyl hydrolases family 28 144 426 IPR000743 GO:0004650|GO:0005975
Vifa3g02870 473 SUPERFAMILY Pectin lyase-like 44 448 IPR011050 -
Vifa3g02870 473 SMART pbh1 243 264 IPR006626 -
Vifa3g02870 473 SMART pbh1 216 242 IPR006626 -
Vifa3g02870 473 SMART pbh1 305 326 IPR006626 -
Vifa3g02870 473 PANTHER PECTIN LYASE-RELATED 30 458 - -
Vifa3g02870 473 Gene3D - 38 433 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02870 Vifa-Chr3 807680999 807682775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02870 39 465 Glycoside Hydrolase AT3G48950 69.515 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02870 - - gmx:100779166 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02870 3 807680999 807682775 Vifa3g02870 3 807680999 807682775 ECH