Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02837 ATGGAGAAGATGCATTACGCCGAGGAGTTAGTAAGGGAATTTCTTGTGTTCCGAGGATTCACCAACACTCTCGAAGCTTACGAAACCGAATTGCGCACCGACGTCGGAAAAGGCTTCCAGGTTGACAAAATTCTTGACCTAATCTTCTCGTTATACGTTCCGAAGTTTCAGATTGATAAATTGGTAGCGCTTCTCGGTTTCTTCAAACACTATCTCTCTTCGTCCTTCGAAACCACACTCGTTTCAACTTTCTCTAAATTGGAAGCTTCTGTTTTACGATTCTACGTCGTTCACGCTTTGCAAACCAATCGGAGGGATAAGGTTGTTGAGTTTTTCACTGTTCATGGTCCTGATTTGTTGCAGAGTTCTCAGGAGGATTGGACTCAATGGTTTGCAATCCCTTATGTGAAGAATCCACAATTGGATCCTGAATTTCGAGTATTTTTCTCCAAGGAGTGGTGTCAGGCTTTGAATCTTTCTGTTAGAAACTTCTTTAGTGAGATCTTCAATGCTACTCGTCTACCTGCTCTACTGAAGATTAGTTCAGAGATGAATGCTACCAACCTCCTCAAAAGAGATATCACACTGCTAAATATTAAATTGTCAGAACTTCAGGCTTTACTCAATGAGAAAGAGACACAATTAAGGCAGTTTAAAAGTATGGAAGGAAATATTAGCTCATCAAGCAATTTAAATGAAGAAAGTACTCATATGTCAAAAGATTCTCCAGAGGCTTTTCCACGAGAAGTTCAAACAGAGATTGGCCAAGGTTTAGTTGTGGGTGAGCCTGGAAGTTTTCAGTCTGAGTTTGTCAGCTCTAAGTCTGGCGATAATTCAACTTTCTTATTGAATGACTATCTTGGAAATGGCAAGGCTGGCAATACCACTTTAAAAGAAAACGATGGGGATGTGTCTAGGGAAGAAGACTTTGATGAGGTCAATGTAGAGCACCAGGAGACTTTTTTGGGGCACACCAGTCCAATCAGCCGGTGCTGCTTCTCTGCATCTGGAAACAATATTGCTAGTGCTTCTCTAGATGGAACTGCCAGGATATGGACATACGATGCATCAACTCCAGCGTCTAGAAATGCAACCATATATTGTGGCACTGAAATTCTGTCACTTGACTGGGAATGCAAATCAGACCGCTTGCTTCTGATAGGTACGTCTGATGCGTGCATTAAGGCATGGAATGTGGACGCAAAGAGAGTTGTTTGTGACCTTAACACAACTGAAGCATTTCCAAGTGTGTTGGACATAAAGTGCAGTCCTGTTGAACCTATTTTTGTGTCTGCAGCAGCATCTGGAGGGTCTGGTTCCAACTATTTTGACAACCTGGGTTTCGCTTCACTCACTGTATGGAACATGAAGACATGGAAGGCCATGACAGTTCTTCCTCTTGGAGAAGATCCACCGGCAATTACTTCTCTGTGTTTCAATCACAACGGGAAGATTTTAGCAGCTTCTGCTGTTGATGGAATGATTCACATGTTCGACATGTCTGCTGGTCTACAAATCACTGGCTGGCCTGCACATGATTCTTCCATCAGTTCTATTCTTTTTGGACCAGATGAGACTAGCATTTTTAGCTTCGGCTCAGATGGGAAGATTTTTGAGTGGAGCTTGCAAAACCAAGGTCAAATCTTGTGGTCAAGAGACTGTAGTAGGTTTTGTTACCCCGTTAACGAATCAAATTATTATAGACGTGATATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCACTTAGAGCACCCATATATCAGGTTCAGGATCATTTGAATGGTTGGAGAACACTTTCTCACGGTGCTTCTATTACTGCTGTAGATTGGCATCCAACTTTGCCCATTTTCTTGACCGGATCAGCTGATAACTCTGTCCGAGTAACATCTTTACTATCATAG 1917 0.4225 MEKMHYAEELVREFLVFRGFTNTLEAYETELRTDVGKGFQVDKILDLIFSLYVPKFQIDKLVALLGFFKHYLSSSFETTLVSTFSKLEASVLRFYVVHALQTNRRDKVVEFFTVHGPDLLQSSQEDWTQWFAIPYVKNPQLDPEFRVFFSKEWCQALNLSVRNFFSEIFNATRLPALLKISSEMNATNLLKRDITLLNIKLSELQALLNEKETQLRQFKSMEGNISSSSNLNEESTHMSKDSPEAFPREVQTEIGQGLVVGEPGSFQSEFVSSKSGDNSTFLLNDYLGNGKAGNTTLKENDGDVSREEDFDEVNVEHQETFLGHTSPISRCCFSASGNNIASASLDGTARIWTYDASTPASRNATIYCGTEILSLDWECKSDRLLLIGTSDACIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGSGSNYFDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSFGSDGKIFEWSLQNQGQILWSRDCSRFCYPVNESNYYRRDMALDANGRRLLVTSSSLRAPIYQVQDHLNGWRTLSHGASITAVDWHPTLPIFLTGSADNSVRVTSLLS 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02837 638 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 603 638 - -
Vifa3g02837 638 MobiDBLite consensus disorder prediction 222 243 - -
Vifa3g02837 638 Pfam WD domain, G-beta repeat 318 352 IPR001680 GO:0005515
Vifa3g02837 638 Pfam WD domain, G-beta repeat 603 633 IPR001680 GO:0005515
Vifa3g02837 638 Coils Coil 194 224 - -
Vifa3g02837 638 ProSiteProfiles Trp-Asp (WD) repeats profile. 509 544 IPR001680 GO:0005515
Vifa3g02837 638 MobiDBLite consensus disorder prediction 222 236 - -
Vifa3g02837 638 Gene3D - 180 435 IPR015943 GO:0005515
Vifa3g02837 638 SMART WD40_4 458 499 IPR001680 GO:0005515
Vifa3g02837 638 SMART WD40_4 597 635 IPR001680 GO:0005515
Vifa3g02837 638 SMART WD40_4 314 353 IPR001680 GO:0005515
Vifa3g02837 638 SMART WD40_4 359 398 IPR001680 GO:0005515
Vifa3g02837 638 SMART WD40_4 502 541 IPR001680 GO:0005515
Vifa3g02837 638 PANTHER OS05G0299300 PROTEIN 1 636 - -
Vifa3g02837 638 Gene3D - 566 638 IPR015943 GO:0005515
Vifa3g02837 638 Pfam Anaphase-promoting complex subunit 4 WD40 domain 468 521 IPR024977 -
Vifa3g02837 638 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 638 IPR001680 GO:0005515
Vifa3g02837 638 Gene3D - 436 565 IPR015943 GO:0005515
Vifa3g02837 638 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 362 IPR001680 GO:0005515
Vifa3g02837 638 SUPERFAMILY WD40 repeat-like 310 633 IPR036322 GO:0005515
Vifa3g02837 638 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02837 Vifa-Chr3 797081188 797086760 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02837 K24760 - gmx:100788591 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02837 3 797081188 797086760 Vifa3g02837 3 797081188 797086760 ECH