Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02832 ATGGCAAGAAATTCACATACCTTGTCACTTTTCCTTCTCTTCCTCACTCTTGTTGTAACCTCCCATGCAGGTGGCATAGCCATCTACTGGGGCCAACACAGTGAAGAGGGCACATTATATGAAGCATGTGCCACTAGAAGATACACCCACATAAACATTGCCTTCCTCGAAAGGTTCGGCAATGGCCGAATTCCGAAACTGAATCTCGCAGGTCACTGCAACCCTTCAACCAACTCATGCACCAGAATAGGTGATCACATCAGGTATTGCCAGAGCAGAGGTATCACAGTGTTACTTTCTATCGGTGGTGGCATCGGACGATACTCTTTGGCTTCAAGAGAGGATGCTAGAGACTTCTCAAAATATTTATGGAACACTTTCTTGGGTGGCACGTCATTTTCAAGACCATTTGGTGATGCTGTGTTGGATGGTATAGATTTTGATATTGAACTTGGCTCGGCACAAAACTGGCAATACCTTGCACAACATCTCAAGGATTATCATGGTGTGTACCTAAGTGCTGCTCCTCAATGTCCATTTCCTGATAGATTCTTGGGTAGGGCCCTTGAAACAGGACTTTTTGACTTTGTTTGGGTTCAGTTCTATAATAACCCTGCATGTGAATATTTTAATGATAGAAAAAATAACCTTGAGAGATCATGGAAACAATGGACAACTGCTATTCAATTTGGAGAGGTATTTTTGGGATTGCCGGCCGCTGAGGGCGCAGCTGGAAACGGTTTTATCCCGGCCGACGTGTTGACGTCTGAAATACTACAAGGGATTCAGTATACATCAAAGTATGGAGGTGTTATGCTTTGGTCAAGATACTTTGATGAGAGGACTGGTTACAGTGCATCCATTATAGATAGTGTGTGA 879 0.4369 MARNSHTLSLFLLFLTLVVTSHAGGIAIYWGQHSEEGTLYEACATRRYTHINIAFLERFGNGRIPKLNLAGHCNPSTNSCTRIGDHIRYCQSRGITVLLSIGGGIGRYSLASREDARDFSKYLWNTFLGGTSFSRPFGDAVLDGIDFDIELGSAQNWQYLAQHLKDYHGVYLSAAPQCPFPDRFLGRALETGLFDFVWVQFYNNPACEYFNDRKNNLERSWKQWTTAIQFGEVFLGLPAAEGAAGNGFIPADVLTSEILQGIQYTSKYGGVMLWSRYFDERTGYSASIIDSV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02832 292 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 142 150 IPR001579 GO:0004553|GO:0005975
Vifa3g02832 292 SUPERFAMILY (Trans)glycosidases 21 288 IPR017853 -
Vifa3g02832 292 CDD GH18_hevamine_XipI_class_III 24 290 IPR045321 -
Vifa3g02832 292 PANTHER ENDOCHITINASE 1 288 - -
Vifa3g02832 292 Pfam Glycosyl hydrolases family 18 26 243 IPR001223 GO:0005975
Vifa3g02832 292 Gene3D Glycosidases 24 290 - -
Vifa3g02832 292 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 24 292 IPR001223 GO:0005975
Vifa3g02832 292 FunFam Acidic endochitinase SE2 24 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02832 Vifa-Chr3 795538332 795539210 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02832 10 292 Glycoside Hydrolase AT5G24090 58.478 6.06e-126 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02832 K01183 - gmx:100809864 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02832 3 795538332 795539210 Vifa3g02832 3 795538332 795539210 ECH