Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02670 ATGGGTAACAAAAGAAAACAGCACCGCCATCACCACAACACATCCTCTCCTTCTTCCTCATCCTCTCTCTCCACCGACTCCGATTCAGACTCCGACCGCTCTTCCAAGCGCCGCCGCCAACGCCGCGAAAAAGAGCGACGCAGAAAGAGCAACACAACCTCTCTTTCTTCTTCAGCCTCTTCCTCCACTGACTCCGATTCAGACTCCGACCGCTCTTCCAAGCGCCGCCGTCGCCATCGCCGTGAAAAAGAGCGCCGCAGAAGGAGCGATGGAAGCTCCAAACGTGAAAGGGAGAGTAAGAGAAAGGAAAAGAGAAAAAGGAGAGACAGAGAGAGGAAAAAGTCCAAGCGGTATCACTATTCCGATGAATCCCAATCTTCCGACGAGGAAGATCATCCCAGGATTCAGCCCCATACAGTACTCTGTGAAATGATGAACGAGTTTCCCAATGTTGGCAACGATTTGAAGCAGTTATTGCAAATGATTGATAATGGGCAAGCTGTGGATATAAAGGATATATCAGAAAAGTCTCTAGTGAAGCATTTGAAGAATCTCTTTCTTTCCTTGAATCTAAAGGAAAATGGGGATAGAGTTTTTTTACTGCCTTCTAAAGCTCCCCCTACTTTAGATGTTGTTGGCCCTCTGATTCAATCTCTTATGCATCAAGGGAATGATCAAGCTGATCCTTCCGCTGCAATGCCTGAAACATGTTCGGTTCCGACAGAACAGATGGGAGACGACGGTTCGAAAAAACCTCCCGAGGATCATTCTGTTGGTCCTAGAAAAAGGGTTATTGGTCCTGCAATGCCATCTGCTGAATTACTCGCTGCTGCTGCTAAATTAACAGAGGCACAGACCGCGTTCATAGAAGCTGAATTGGATGATGATACTGAAGTATTTGTGGGACCTCCACCTCCTGCTATGGTTTCTGAAGCAGAATCAGCAAACGAGGCAGAACGTTTTGAGGAGGTTACCAGGATAATGGACGTTGAGATCGACAGCCCGTACGATGTTCTAGGAGTTAACCATAATATGTCTGATGGTAACATAAAGAAAAAGTACTGGAAGATATCACTATTAGTTCATCCAGATAAATGCTCTCACCCTCAAGCCAATCAAGCATTTATTAAACTAAATAAAGCTTTCAAAGAGTTACAAGATCCCGAAAAGCGGAAAGCAATGGATGATAAAATCAAACTCAAGCAAGAACAGGAGGACTTTAAGGCTGAGCTTAAAGTCATGCGAGAGACTGCACTGTGGAGAAGATCCCAAGGAATATCAATGGAAGGTGATGATGAGCTTCTGGCACAGACAGAGGTTAAAGTGGAACCCAAAAGAGATGAATGGATGACAACACTACCTCCGGAGAGAAAACCTGGTGGTGTGCCTACGCAATCAACCCAATTTAGCAGGGAAACAAAGGAAGGTAGAGGAGACACTAGTATTTGGACAGACACCCCTACCGACAGAGCTCAGAAAGCAAAGATGAATTATTTGGAAGCATACAATCAGGCAACAGCATTAGCCTCAAACGAAGAAGAAACAAAAAGGGCTAATACAGATGCAGATTTGGTGGACAAATACAACAAAGCAAAAAGATCAAAAACATTGGTGCAAAAACATCAAGAAGAGGTTGCTAGCAAATCCAAGAAAAAGTCCAAGCAACAGACAGAGAAGGGAGAGAAAGAATGGGTGGGGCAACATCCATGGAAACCATGGGATCGTGAAAAGGATCTAACAGCTGGGAGGATGAAAGTAAAACTTGATGCAGAAGGCATGTCTGAGGGATTATCTTCAAGGTTTAATTCTGGAAACTTTCAAAGGAACTTCCTTTGA 1836 0.445 MGNKRKQHRHHHNTSSPSSSSSLSTDSDSDSDRSSKRRRQRREKERRRKSNTTSLSSSASSSTDSDSDSDRSSKRRRRHRREKERRRRSDGSSKRERESKRKEKRKRRDRERKKSKRYHYSDESQSSDEEDHPRIQPHTVLCEMMNEFPNVGNDLKQLLQMIDNGQAVDIKDISEKSLVKHLKNLFLSLNLKENGDRVFLLPSKAPPTLDVVGPLIQSLMHQGNDQADPSAAMPETCSVPTEQMGDDGSKKPPEDHSVGPRKRVIGPAMPSAELLAAAAKLTEAQTAFIEAELDDDTEVFVGPPPPAMVSEAESANEAERFEEVTRIMDVEIDSPYDVLGVNHNMSDGNIKKKYWKISLLVHPDKCSHPQANQAFIKLNKAFKELQDPEKRKAMDDKIKLKQEQEDFKAELKVMRETALWRRSQGISMEGDDELLAQTEVKVEPKRDEWMTTLPPERKPGGVPTQSTQFSRETKEGRGDTSIWTDTPTDRAQKAKMNYLEAYNQATALASNEEETKRANTDADLVDKYNKAKRSKTLVQKHQEEVASKSKKKSKQQTEKGEKEWVGQHPWKPWDREKDLTAGRMKVKLDAEGMSEGLSSRFNSGNFQRNFL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02670 611 Coils Coil 390 417 - -
Vifa3g02670 611 MobiDBLite consensus disorder prediction 99 114 - -
Vifa3g02670 611 MobiDBLite consensus disorder prediction 532 578 - -
Vifa3g02670 611 Pfam Protein of unknown function (DUF3752) 454 601 IPR022226 -
Vifa3g02670 611 MobiDBLite consensus disorder prediction 222 263 - -
Vifa3g02670 611 MobiDBLite consensus disorder prediction 14 28 - -
Vifa3g02670 611 PRINTS DnaJ domain signature 336 354 IPR001623 -
Vifa3g02670 611 PRINTS DnaJ domain signature 354 369 IPR001623 -
Vifa3g02670 611 PRINTS DnaJ domain signature 370 390 IPR001623 -
Vifa3g02670 611 ProSiteProfiles dnaJ domain profile. 334 399 IPR001623 -
Vifa3g02670 611 SMART dnaj_3 333 390 IPR001623 -
Vifa3g02670 611 Gene3D DnaJ domain 318 418 IPR036869 -
Vifa3g02670 611 CDD DnaJ 335 387 IPR001623 -
Vifa3g02670 611 Coils Coil 538 558 - -
Vifa3g02670 611 MobiDBLite consensus disorder prediction 1 134 - -
Vifa3g02670 611 SUPERFAMILY Chaperone J-domain 306 392 IPR036869 -
Vifa3g02670 611 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 4 611 - -
Vifa3g02670 611 MobiDBLite consensus disorder prediction 115 134 - -
Vifa3g02670 611 MobiDBLite consensus disorder prediction 247 261 - -
Vifa3g02670 611 MobiDBLite consensus disorder prediction 52 66 - -
Vifa3g02670 611 MobiDBLite consensus disorder prediction 450 486 - -
Vifa3g02670 611 Pfam DnaJ domain 335 395 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02670 Vifa-Chr3 734641744 734663074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02670 300 399 Miscellaneous Gene Families AT5G49580 32.039 7.26e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02670 - - gmx:100788598 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02670 3 734641744 734663074 Vifa3g02670 3 734641744 734663074 ECH