Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01661 ATGTTGAACTTCTTCAAAAGATTGTTATGCCTTATATGTTTTCTCTTGCTACCCTTTGATGTTTCTGTGTGTTTATCTTCTTCTTCTTTACTTGATGACTTCACCTTTTGTTTGGAGAATCATCAAATTAAAAACTTCACTGTTTTTCCTTATAATGATTACTACAAAATTCTCAATTTTTCAATTCAAAACCTTCGGTTTGCAGAACCTACAACACCTAAGCCAATAGTAATTGTACTTCCAGAGAGTTTGAAGCAGATACAGAAAAGTTTAGCATGCTGTAGAAGATTCTCTTTGGGAATAAGAGTGAGAAGTGGAGGACATAGCTATGAAGGTACTTCTTCTGTTGCTGGTGACGGTACTCTTTTTGTCATCATTGACATGATGAATTTAAACCATGTTAAGGTTGATATGGAGACAAAAACAGCTTGGGTTGAAGGCGGTGCAACATTGGGAGAAACTTACTATGCTATCTCTCAGGCAAGTCATGAATATGGGTTCTCAGCTGGGTCATGTCCAACCGTAGGAGTTGGCGGGCATATCAGTGGTGGTGGATTTGGTCTGTTGTCTAGAAAATATGGACTTGCAGCCGATAACGTGGTCGATGCGTTACTTATCGATGCTGAAGGACGGTTATTAGACCGCAAAACTATGGGAGATGATGTGTTTTGGGCTATTAGAGGAGGTGGTGGTGGTGTTTGGGGAGTTGTATATGCATGGAAAATTCAGTTATTGAAAGTGCCACAAATTGTAACTAGTTGTAGTGTACCTAGAACAGGAACAAAGAGAGATATTGCTAAATTGCTAAACAAATGGCAAGATGTGGCACCAAATTTGGAAGATGATTTCTACTTGTCATGCTTGGTTGCTGCTGCTGGTTTGGCTGAACCTAAAAATGTTGGCATATCAACAACATTTAATGGTTTTTTTCTTGGTTCTAAGTCCAATGCTACATCTATATTGAATCAAGATTTTCCTGAATTGAATATTGTAGACGAAGAATGCAGCGAAATGAGTTGGATTGAATCAATTGTTTTATTTTCTGGACTAAATGATGGAGCTTCTGTTTCTGACTTGGGGAATAGGTACTTGGAAGATAAACAATATTTCAAGGCAAAATCAGATTATGTGAGGAGCTATGTTCCACTTTTTGGTATAGAAACTGCATTGGGTTTTCTAGAAAAGGAGCCAAAAGGGTCTGTTGTTTTGGACCCTTATGGTGGGATTATGAATAATATAAGCAGTGATTCCATTGCTTTTCCTCATAGAAAAGGAAACATTTTTTCAATTCAGTACTTGATTTATTGGAAAGAAGAAGACAATGACAAGAGTAGTGATTATATTGACTGGATAAGAGGATTCTATTCTTCTATGACTCCTTTTGTTTCACATGATCCAAGAGCTGCATATATTAATTACATTGATTTTGATCTTGGAGTAATGGAGGTGATTAGTGTTAATCATGTGGTTAACCCAAGGGTTTGGGGTGAAAAGTATTTCTTGGATAACTATGATAGACTTGTGAAAGCCAAGACATTGATTGATCCTAACAATGTTTTCACCAATGAACAAGGCATTCTTCCTAAGACCTTTGCCAGCTCCAATGCCTAA 1611 0.3724 MLNFFKRLLCLICFLLLPFDVSVCLSSSSLLDDFTFCLENHQIKNFTVFPYNDYYKILNFSIQNLRFAEPTTPKPIVIVLPESLKQIQKSLACCRRFSLGIRVRSGGHSYEGTSSVAGDGTLFVIIDMMNLNHVKVDMETKTAWVEGGATLGETYYAISQASHEYGFSAGSCPTVGVGGHISGGGFGLLSRKYGLAADNVVDALLIDAEGRLLDRKTMGDDVFWAIRGGGGGVWGVVYAWKIQLLKVPQIVTSCSVPRTGTKRDIAKLLNKWQDVAPNLEDDFYLSCLVAAAGLAEPKNVGISTTFNGFFLGSKSNATSILNQDFPELNIVDEECSEMSWIESIVLFSGLNDGASVSDLGNRYLEDKQYFKAKSDYVRSYVPLFGIETALGFLEKEPKGSVVLDPYGGIMNNISSDSIAFPHRKGNIFSIQYLIYWKEEDNDKSSDYIDWIRGFYSSMTPFVSHDPRAAYINYIDFDLGVMEVISVNHVVNPRVWGEKYFLDNYDRLVKAKTLIDPNNVFTNEQGILPKTFASSNA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01661 536 SUPERFAMILY FAD-binding/transporter-associated domain-like 62 248 IPR036318 GO:0050660
Vifa3g01661 536 Gene3D - 33 131 IPR016167 -
Vifa3g01661 536 PANTHER OS08G0158400 PROTEIN 27 526 - -
Vifa3g01661 536 ProSiteProfiles PCMH-type FAD-binding domain profile. 71 247 IPR016166 GO:0071949
Vifa3g01661 536 Pfam FAD binding domain 75 213 IPR006094 GO:0050660
Vifa3g01661 536 Pfam Berberine and berberine like 469 526 IPR012951 GO:0016491|GO:0050660
Vifa3g01661 536 Gene3D - 135 528 IPR016169 -
Vifa3g01661 536 Gene3D - 250 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01661 Vifa-Chr3 429637503 429639113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01661 3 531 Miscellaneous Gene Families AT4G20820 40.816 1.85e-128 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01661 - - gmx:100790761 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01661 3 429637503 429639113 Vifa3g01661 3 429637503 429639113 ECH