Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01656 ATGTCTAATCCTCAGAATGATCCGCTTTCGCAAGCTGAGACAACTTGTGGATCGCTTCTGTATGAACTTCAGATAATATGGGATGAAGTTGGGGAGGCTGAGCCTGATAGAGACAGAATGCTGTTTGAGCTTGAACAAGAGTGTCTTGAAGTTTATAGAAGGAAAGTAGATCAGGCGAACCGGTCTAGAGCTCAACTAAGGCAAGCAATTGCTGATTGTGAGGCTGAACTTGCAGCCATCTGTTCAGCAATGGGAGAGCGTCCAGTTCACATTAGACAGTCTGATCAAAATGCCGGAAGCCTAAAGGAAGAGCACGCAAGAATTCTTCCACAGTTGGAAGAGATGAAAAAGCAGAAGGTTGAGCGAAGAAATCAATTTATAGAAGTACAAGAGCAGATTCAAAGCCTCTCAATTGAGATTTTTGGCCCCAAAGATATTCCTTCCATTGTAGATGAAACTGATTTGTCTACGAGAAAACTTGAAGAATTGCACAGGCAACTAAATGCACTTCAAAGTGAAAAGAGTTGTCGCTTAAAGACGGTTCAGGAGCACCTGTGTACTTTAGAGTCTCTTTGTTTAGTGCTTGGTTTTGACTTTAAGCAGACAGTCCTTGGAATTCATCCCAGTTTAGGAGAATTAGAAGGACCGAAGAGTGTTAGTAATGATACCATCCAGCAATTGGCTGTTGCAATACAACAACTACGGGAAATTAAACTACAGAGGATGCAGAAGCTCCAAGATCTTGCAACAACAATGTTGGAGCTCTGGAACCTGATGGATACACCTATTGAAGAGCAACAGAATTTTCAGAATGTTACTTGTAATATAGCTGCTTCAGAACATGAAATAACTGAACCAAACACCTTATCTGCGGATTTCATCAATTGTGTGGAGGTTGAAGTATCTAGGTTAGAAGAATTAAAATCCAGCAAAATGAAGGAGCTTGTACTAAAGAAGAGAACCGAGCTGGAGGAGATTTGTCGAAAGACTCATTTGGTTCCAGAAATAGATGGTGCAGTCGAATATGCTGTTGAAGCTATAGAATCAGGATCCGTGGACCCTGGTTGTGTGCTTGAACAATTTGAGCGTCGGGTTGCCCAAGTTAAAGAGGAAGCTCTGGGTCGAAAAGAAATACTTGAAAAGGTTGAGAAGTGGTTAGCAGCATGTGATGAAGAGGCTTGGCTTGAGGAATACAACAGGGATGATAATCGATATAATGCTGGAAGAGGCGCTCATCTCACTCTGAAGCGAGCTGAGAAAGCTCGTGGCTTGGTGAACAAAATTCCAGCAATGGTTGATGTGCTGACTTCAAAAACTATGTCATGGGAAGCGGAAAGAGGTGTACAGTTCGCATATGACGGTATTCGCTTACTCTCGATGCTTGAAGAGTACAACATATTACGGGAAGAGAAAGAGCAAGAACGCCGCAGGCAGCGGGACATGAAGAAGCTTCAGGGACAAATGATAGCGGAACAGGAGGCACTATATGGGTCTAAGCCAAGCCCTTCCAAGCCCCAGAGTGTAAAGAAAGGATCTAGGATGTCAACAGGAGGTGCAGCTAGTAGAAGAGTTTCTCTTGGAGGAGCAATGCTTCAGACTCCAAAACCTGATCCAAAAGCTACTAATTCACGTGCCATGAGAAAGACTGACAAAGTGCATGAAATTGAGCAACTAAGTTACCTAGAAGATGGTATTTCATGTTTATCATCAGCTCGAAGAGGACTGGATATTGCTGGCATTCCTGTTAAAAAATATTCATTTGGTGCTGCTAGTGCTAATGGCACGGAATCCCCTATAACAAGACAACCTAGTGTTCATGGCATGGAATCCCCTCTAACAAGGCAACCTTTTTCTCCCATCTCATCTAATGTGTCATCAAAAGCAAATGTGGTAAATGCTGCAAATGAACATAGTACACAGAGTGAGAAGTTGCAGAAAATAATGCCACTCAACAATGTGCCCTTCACTAGTCCCTGCAAGGCAATGACTGTGGTTGATAATGAGAATAGAACTCCAAAGACAATGCCTATTCCTATCCCTGCAACACCTTCAACAGTATCAGTTCCTATGAATATGGCCTTGACTCCAGCTCCTTCATCAGTTTTGATGAATGCAGCCATGACTCCAGTTCCCTCGGATCCTTTGGGATCTGACATGACTCCAGTCCAAGAGATTGAGTATTCTTTTGAGGAAAGAAGACTCGCTTATTATATGTTAGCATGA 2223 0.4278 MSNPQNDPLSQAETTCGSLLYELQIIWDEVGEAEPDRDRMLFELEQECLEVYRRKVDQANRSRAQLRQAIADCEAELAAICSAMGERPVHIRQSDQNAGSLKEEHARILPQLEEMKKQKVERRNQFIEVQEQIQSLSIEIFGPKDIPSIVDETDLSTRKLEELHRQLNALQSEKSCRLKTVQEHLCTLESLCLVLGFDFKQTVLGIHPSLGELEGPKSVSNDTIQQLAVAIQQLREIKLQRMQKLQDLATTMLELWNLMDTPIEEQQNFQNVTCNIAASEHEITEPNTLSADFINCVEVEVSRLEELKSSKMKELVLKKRTELEEICRKTHLVPEIDGAVEYAVEAIESGSVDPGCVLEQFERRVAQVKEEALGRKEILEKVEKWLAACDEEAWLEEYNRDDNRYNAGRGAHLTLKRAEKARGLVNKIPAMVDVLTSKTMSWEAERGVQFAYDGIRLLSMLEEYNILREEKEQERRRQRDMKKLQGQMIAEQEALYGSKPSPSKPQSVKKGSRMSTGGAASRRVSLGGAMLQTPKPDPKATNSRAMRKTDKVHEIEQLSYLEDGISCLSSARRGLDIAGIPVKKYSFGAASANGTESPITRQPSVHGMESPLTRQPFSPISSNVSSKANVVNAANEHSTQSEKLQKIMPLNNVPFTSPCKAMTVVDNENRTPKTMPIPIPATPSTVSVPMNMALTPAPSSVLMNAAMTPVPSDPLGSDMTPVQEIEYSFEERRLAYYMLA 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01656 740 SUPERFAMILY Sec2 N-terminal region 70 194 - -
Vifa3g01656 740 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 11 570 IPR007145 GO:0000226|GO:0008017
Vifa3g01656 740 Coils Coil 153 173 - -
Vifa3g01656 740 Coils Coil 457 487 - -
Vifa3g01656 740 Coils Coil 112 132 - -
Vifa3g01656 740 Coils Coil 49 76 - -
Vifa3g01656 740 MobiDBLite consensus disorder prediction 491 548 - -
Vifa3g01656 740 MobiDBLite consensus disorder prediction 499 514 - -
Vifa3g01656 740 FunFam 65-kDa microtubule-associated protein 6 365 498 - -
Vifa3g01656 740 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 506 - -
Vifa3g01656 740 Gene3D - 364 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01656 Vifa-Chr3 428281319 428285317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01656 10 517 EF-hand Containing Proteins AT5G62250 58.574 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01656 K16732 - gmx:100777734 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01656 3 428281319 428285317 Vifa3g01656 3 428281319 428285317 ECH