Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00182 ATGGCGCTTTGGCACCGAATCCGTAACTCTAACCTCAAAACTTTATACTCCCAATTCCACAGATCTTACACTCATCATCATCTTCCCCATTCTTCTCTCTCCAATTCCACCCCCAAAACTCCCCCTATTCCCCTTTTCCATCACAAACCCTCTTTTGTTTTCAATGCCGTCAGGTTTTTCGCTGTTCCCGTTCAGTTTCAGGTTAAGCCTAAGAATGAGGAGGACGATTCAGATGGGCCACGGTTGAATGATCAAATCAAAGCTAAATTTGTCAGACTTGTCATGGATGATGGACATTCAGTAGTGTCGAGGTTTGAAGCATTGGAACATGCCAGGAAGCTTAAATTTGATTTAGTTGAGGTTGATAAAAATGCCAAGCCACCTGTTTGTAAAATCATGGACTTCCACAAGGAAATGTACAAGAAAAAAGAAAATGACAAGGAACGCGCTAAAAGCAAGTCTGAGATGACAATGCGAAAGGAATGTAAGGAAGTACGATTTTCTGAAAAAACCGAATCAAAAGATCTTAAGATGAAAGCTGACATGGTTCGAAAGTTAATGGATAAGGGTTATCGGGTGAAGGTCAAGGCAACAGGCAACGCAGATCAGGCCATGTTAGACTCAATATCCCGTCTTTCGGCTCTGATAGAAGATGTCTGTATTGTGGAAAGTGGACCTCATTTGACAAAAAAAGAAGCTTATATGATAGTCAGACATCTGAAATATGGACCGGCTAAGAAAGGTGGGAAAAAATCTCAAGATGCCGTACATACAGATGTGAAAGCCGAGGAGGGTGATGTGGAACCATTAACTGCCAGTTCTAGTGATTCTATTAACCATAAGAATCAGAGTTCTCCTGAATATCAGTTTGAAACTCAAGAGCCTCTGATTTCTCATGGTAACAAGCAATTTCTATTCTCGGCTGATAAATCAGATAAAAGTGTTAACGACAGGAATGATTCAGTTTCTCCACCCGTACTAGAAAATAGATACAAAAAAGCTAATCATCGTGGCGAGAACAAGGTTCAACCGAACGCGCAGGTGCCTCCTGCTGTGACTGAAAATAGGTACAGAAAAGCCGAGCCAAGAAACTGGTCCCAACAAACAACACCGAATACAAATCCAGCGACAAGAGACACAAACAGGTGGACACCCTCGAATACAAATCACCCGAATTTGAATCGGCCAAGAAATGTCCCGGTAGATGTTAATGTTAATCCCAAAATTGATAGTCCTCCTGGATCAAGAAGCCCGATGCCTCCCCGTGACAATATCCACCCGAATCCTAGGGGTCCGAATACAAAAAGTCCCGGCTACGGTCTTTTTAGTAGGGATGCATAG 1341 0.4251 MALWHRIRNSNLKTLYSQFHRSYTHHHLPHSSLSNSTPKTPPIPLFHHKPSFVFNAVRFFAVPVQFQVKPKNEEDDSDGPRLNDQIKAKFVRLVMDDGHSVVSRFEALEHARKLKFDLVEVDKNAKPPVCKIMDFHKEMYKKKENDKERAKSKSEMTMRKECKEVRFSEKTESKDLKMKADMVRKLMDKGYRVKVKATGNADQAMLDSISRLSALIEDVCIVESGPHLTKKEAYMIVRHLKYGPAKKGGKKSQDAVHTDVKAEEGDVEPLTASSSDSINHKNQSSPEYQFETQEPLISHGNKQFLFSADKSDKSVNDRNDSVSPPVLENRYKKANHRGENKVQPNAQVPPAVTENRYRKAEPRNWSQQTTPNTNPATRDTNRWTPSNTNHPNLNRPRNVPVDVNVNPKIDSPPGSRSPMPPRDNIHPNPRGPNTKSPGYGLFSRDA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00182 446 MobiDBLite consensus disorder prediction 362 395 - -
Vifa3g00182 446 SUPERFAMILY Translation initiation factor IF3, C-terminal domain 161 241 IPR036788 GO:0006413
Vifa3g00182 446 Coils Coil 133 153 - -
Vifa3g00182 446 MobiDBLite consensus disorder prediction 307 446 - -
Vifa3g00182 446 NCBIfam translation initiation factor IF-3 79 237 IPR001288 GO:0003743|GO:0006413
Vifa3g00182 446 FunFam Predicted protein 73 148 - -
Vifa3g00182 446 Gene3D - 156 245 IPR036788 GO:0006413
Vifa3g00182 446 MobiDBLite consensus disorder prediction 244 290 - -
Vifa3g00182 446 MobiDBLite consensus disorder prediction 413 427 - -
Vifa3g00182 446 MobiDBLite consensus disorder prediction 270 290 - -
Vifa3g00182 446 PANTHER TRANSLATION INITIATION FACTOR IF-3 6 277 IPR001288 GO:0003743|GO:0006413
Vifa3g00182 446 SUPERFAMILY Translation initiation factor IF3, N-terminal domain 79 151 IPR036787 GO:0003743|GO:0006413
Vifa3g00182 446 MobiDBLite consensus disorder prediction 143 162 - -
Vifa3g00182 446 Gene3D - 73 149 IPR036787 GO:0003743|GO:0006413
Vifa3g00182 446 MobiDBLite consensus disorder prediction 247 266 - -
Vifa3g00182 446 Pfam Translation initiation factor IF-3, N-terminal domain 82 148 IPR019814 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00182 Vifa-Chr3 14018918 14024111 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00182 K02520 - gmx:100808433 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00182 3 14018918 14024111 Vifa3g00182 3 14018918 14024111 ECH