Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00179 ATGGGTTGTGTTGCTTCAAAGCTAGAGGAAGAAGAAGAAGTTGTAGCTATATGTAGAGAGAGAAAACGTCAGCTGAAGTTAGCTGTAGAGAGAAGATATGCACTTGCTGAGGCTCATTGTAAGTATTTTCACTCTTTGAATGCAGTAGCTGCAGGTATTAAGCTTTTTGTTGCAAGACATTCTTCACCTTCTTCACCTTTTCTCATAACTTTCCCTCCTAAGGACGGTTTTGACCCTTCTCCCTCTCATTCTCATTCTCATTCATCAAGTGAAAATGTCATAAATAACCCTATGTTCCTTCAGCAAACACCTTCAGAAACCAAGCATGAATCCATTGCTTGTAACTCATGCATTGCTTCAAGTTGTTCCTCAGAGTCTTCTGATGAAGAGGGAGAGGGGGGAGAAGAAGGAGAAGGTGGTAGAGAAGAGGTAAATGAACAACCATGTGAGTATTACTACATGCAAATGCCTATGAATATGAATATGCATATGAATATGCCTGTGCCACCTTCAATGCCATCACCACATAGAGATTTTGGTTGGGATTTCTTTTACCCTTTTGATAGTATGAGGCCAGAGGTTATGAATGGCTATCATCGGAACTCTGACGATGATTTGAGAGCGGTGAGGGAAGAGGAAGGGATTCCGGAGTTAGAGGAAGAAGTGGAAAGGGAAGAAGAGATTGAGCATAAGGTGGTGGTGAGTGTTGAGGAGAAGAGTAATGAAGGTGGAGGGAAAGTTATGAGTGGCGATGAAACTGCGAAGACGGTGAATGTGGCTAGTGAAAATGTTGGGGAACAAAAGGGGCTTGCAGTTCTTGATACACCTGCTGAAGGGAGAGAGTTGCTTGAAGCTTTGAAAGATATTGAGGATTATTTCATTAGGGCTTATGAGTCTGGTAAGAGTGTGACAAAGATGCTTGAGGCTAATAGGATTCCCCTTCATTCTAGTTTGGAGGAAATCAAAGAAAGTTCGACGAAACTCATTAATGCGATAACTTGGAAGTCCATGTCTTCTAGGCAATCATCATGCAAGAGTTTGGTGGTTCAGAATATGAAAGATTCTTCAAATTGGGTGGAATATAAGAATGATCTATTCGATGATTATGGAGGAATGGATTCAGGAAGTCATTTGTTAACCTTAGGAAGGTTATATGCATGGGAAAAGAAACTGTTTGAAGAGGTTAAGGCTGGAGATAGCACACGGAAAAATTATGAGAAGAAATGTGCGCAATTAAGAAATAAGAATGTTAGAGGAGATGATGAATTAAGCATGGACAAGACTAGATCTGATTTGAAAGATCTATATGCTGGAATCATGGTTGCAATTCGACGTGCAGAGTCAATCTCAAAGAGAATTCAGAAAATGAGAGATGAAGAATTACAGCCTCAAGTTGTTGAACTACTGAAAGGCCTGACACAATCGTGGAAAATCATGTTGGAGTCCCATGAAACACAGAAGAAGATTCTTTCTGAAGTCAAGTACTTCACATGTCCTGCGAATGGTAAATTTTGCAACCAATCTCGCGGATTGGCAACTCTCCAGCTCGAAGCCGAGCTTCATCATTGGCGCGTGAGTTTTAGAGAGTACACCGCAGCTCAGAAAGCATACGTAGAAGCACTGCATGGATGGTTAAGTAAGTTCATCGTTCCCGAAGTTGAATTTTGCTCGAGAAGCAGAAACGTTTCCATGCCAATGCCATTTCAAGTCAACGGGCCGCCATTACTCGTGATATGCAACGAGTGGTTAAATTCCTTGCGAAAATTACCTGATAAGACAGTAGTACTTGCGTTGAAAAGCGTTGTGAAAGATGTGAAAGCGCTTGGGATTCAACAATGTAAAGAGCAACAACAGAAGAGGAAAGTAGATAGCTTAACAAAAAATTTAGATCAAAGATATTTAGGATCGTATAAACTGAAGACTAAGATGCTTGAGTTACAAGTAACAGAACATAGATCAGAAGAGGAAACGGTTTGTGAAGACGAATGCATGATAGAGAAAAGTGATTACTTGGAGACACTAAGTAGAAAACTAGAGGTAGAGAAAGAGAAGCATTACAGTTGCATGCAAGAAACTCAGAGGATGACATTGAATGGAATGCAATTTGGATTTTCTCGAGTTCTAGAATCTTTGACAGAATTCTCTAAAGCATCACAGAAAATGTACAATGATCTTGTGGCCTTTAGTGAAAATAGTGAGAAAGGTGAGAACGTTTCGTATTTAGAAGATATGAGTTTGGATACTCTTAAAGAGGTGGTTTCAAGTTTCTTTGGTGATCAAAGATGCAAAGTTTTTTATTCATTCACCCTTGATACATTGGATCAAGGCGAAGCGAATGTGAAATCGACCACAACACTGCTCATCGTAGGACCTAGTCTGAAATGGATGAATATCTCAACATTACAATACACCATAGTGGCCAATTTGGATCCTATTGCTGAGATGAATATGTTGGTTGATGACAATGGGGCATTAGAGATTGCTGATTTATATAGGGTTCATCTTAGTGTTGAAGTCTTTATTCAACACACGTTGTCAACGCCTGATTATGCTGATGAGACTGAAGTTGTGTTAGACGAGGTACCCCTTAATGTGATAGTTAATGAGGCAGTAGTTGCGCTTGAAGAGATGTTGAATGAAACTGATGTAAGGGAAGATGGTGTTAGAGTATGTGATGTTAGGAAAGATGATGTTAGCATAGATGGTGTTGGGGAAGATGATATTAGGGAAGATGGTGTTCATGCAGTAGGAACTGATGATAATGTGCCAATGATTGATGTGGTTGATGAGGTTGAAAGTGATGATATTGGACATAGGACTGGTGAGGTAGTATTTGATGATGGCTCTGATGAGTATGACACTGATTTGAAAGAGGAGGAGGATAACCTAATTAACTATGAACACATGGAAAGCAAAAAAGGTAAAGAAAAGTGTGAAGCAAACAAAGAAGATAGCAAAGGAAGTGATAATGAAAGTGATGGTCTAGGAAGTGACTGTGATAGTGATGATAGCAGTAGAGTTAGGAGAAAGAAGCATCCAGTTTTCAAGCTTCAAAAGGATACAGTAGACAATCATAGTTGCAGCAGAGAATATAATGTGAAGTTAATGAAGACCAAATGGTTGAGCAAGAGTGTCATCCTTGAGTCTAGGGCCAAGCCTTTGATAACCATGGTGGAAGAAATTATGATATACATCATAGAAAGATGGGCTACAAACAGGATGAAGTTTGAGAAATTGGCAGATGTTGAAGTGTTGCCTAACATTATGAAGAAGGTTGAAAAAATAAGTTCATACACAAACATGTGGCTTATCAGGATGTCTGATGAGCATATATTTGAAGTGAGGCATCTGGAAAACTCAGCTGAAAAATTCACATTCAACCTGAAGGAAAAGTATTGTTCATGCAGAAGATGGGAGCTAACAGAACTTCCTTATGTTCATTCACTTGCAGCAATCAAAAGTAGGGACCACAAGATTGATGACTACATTCCTGATTACTATAGGAAAGCAAGATATATGCAAGTCTACAAACCTGTAATATATCATGTTAATGGCTCAAACCTGTGGATGAGAACAGAGTATCCTGATATTCTGCCCCCCCAAATTTAG 3609 0.3948 MGCVASKLEEEEEVVAICRERKRQLKLAVERRYALAEAHCKYFHSLNAVAAGIKLFVARHSSPSSPFLITFPPKDGFDPSPSHSHSHSSSENVINNPMFLQQTPSETKHESIACNSCIASSCSSESSDEEGEGGEEGEGGREEVNEQPCEYYYMQMPMNMNMHMNMPVPPSMPSPHRDFGWDFFYPFDSMRPEVMNGYHRNSDDDLRAVREEEGIPELEEEVEREEEIEHKVVVSVEEKSNEGGGKVMSGDETAKTVNVASENVGEQKGLAVLDTPAEGRELLEALKDIEDYFIRAYESGKSVTKMLEANRIPLHSSLEEIKESSTKLINAITWKSMSSRQSSCKSLVVQNMKDSSNWVEYKNDLFDDYGGMDSGSHLLTLGRLYAWEKKLFEEVKAGDSTRKNYEKKCAQLRNKNVRGDDELSMDKTRSDLKDLYAGIMVAIRRAESISKRIQKMRDEELQPQVVELLKGLTQSWKIMLESHETQKKILSEVKYFTCPANGKFCNQSRGLATLQLEAELHHWRVSFREYTAAQKAYVEALHGWLSKFIVPEVEFCSRSRNVSMPMPFQVNGPPLLVICNEWLNSLRKLPDKTVVLALKSVVKDVKALGIQQCKEQQQKRKVDSLTKNLDQRYLGSYKLKTKMLELQVTEHRSEEETVCEDECMIEKSDYLETLSRKLEVEKEKHYSCMQETQRMTLNGMQFGFSRVLESLTEFSKASQKMYNDLVAFSENSEKGENVSYLEDMSLDTLKEVVSSFFGDQRCKVFYSFTLDTLDQGEANVKSTTTLLIVGPSLKWMNISTLQYTIVANLDPIAEMNMLVDDNGALEIADLYRVHLSVEVFIQHTLSTPDYADETEVVLDEVPLNVIVNEAVVALEEMLNETDVREDGVRVCDVRKDDVSIDGVGEDDIREDGVHAVGTDDNVPMIDVVDEVESDDIGHRTGEVVFDDGSDEYDTDLKEEEDNLINYEHMESKKGKEKCEANKEDSKGSDNESDGLGSDCDSDDSSRVRRKKHPVFKLQKDTVDNHSCSREYNVKLMKTKWLSKSVILESRAKPLITMVEEIMIYIIERWATNRMKFEKLADVEVLPNIMKKVEKISSYTNMWLIRMSDEHIFEVRHLENSAEKFTFNLKEKYCSCRRWELTELPYVHSLAAIKSRDHKIDDYIPDYYRKARYMQVYKPVIYHVNGSNLWMRTEYPDILPPQI 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00179 1202 MobiDBLite consensus disorder prediction 932 946 - -
Vifa3g00179 1202 ProSiteProfiles Zinc finger SWIM-type profile. 1124 1156 IPR007527 GO:0008270
Vifa3g00179 1202 MobiDBLite consensus disorder prediction 932 953 - -
Vifa3g00179 1202 Coils Coil 208 228 - -
Vifa3g00179 1202 SMART 26again6 1131 1158 IPR006564 GO:0008270
Vifa3g00179 1202 MobiDBLite consensus disorder prediction 966 1007 - -
Vifa3g00179 1202 MobiDBLite consensus disorder prediction 121 145 - -
Vifa3g00179 1202 Coils Coil 8 28 - -
Vifa3g00179 1202 PANTHER UNCHARACTERIZED 1 730 - -
Vifa3g00179 1202 Coils Coil 402 422 - -
Vifa3g00179 1202 Pfam Protein of unknown function (DUF632) 282 606 IPR006867 -
Vifa3g00179 1202 Pfam Protein of unknown function (DUF630) 1 60 IPR006868 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00179 Vifa-Chr3 13596597 13602479 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00179 - - gmx:100807897 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00179 3 13596597 13602479 Vifa3g00179 3 13596597 13602479 ECH