Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00166 ATGAGTAACCAAAAAACACTTCAAGACTTTTTTGTGCAAGAAAAGCCTCATTTTTCAACACCATCTTCTTCACCTACATCAGGAAATGAAGAAATTCTCTCTACTGTTTCATATTGCACTTTTGTTTTCACTTTCACTGACCCTTTAGAGTCTCCTGCACAAAGAGACTCTAAAAGACTTCAACTCTCAAGACTCATAGCTATGCTGAAAACCTCCAAAAAACCAGTTCATGAGAAAGTTATTGGACCTTTAGTATTAATGATCAAAGCCAATCTTTTTAGGCCACTCCCTCCTCCTACAAATCCTTCTGCTATATCAGAATATCTCGACGAAGAGGATCCTATTTCCATACCTTCCCCTTTATGGTCACATCTACAAATAGTTTACGAAATTCTCCTGAGGCTAGTTAACAGCACTGACACCAAAATACTTAGAAACTATATCGACCATTCGTTTCTCCTTAATCTTCTATCGCTTTTCCAATCCGAAGATCCGAGGGAACGCGAGAGTTTGAAAAACGTGTACCACAAGATATATTCTAAGCTGGTTTGCGACCGTTCCGCCATGAGGAAATCGATGACAGATGTTTTGTTGAACTATGTTTTTGAGACAGAAAAACATTCTGGTATTGCAGATTTGCTTGAGATATGGGGAACTATAGTTAACGGCTTTACCGTGCCGCTCAAGGAAGAGCACAAGTTGTTTCTTATGAGAGTGTTGATTCCTTTACATAAGACCAAAGGGATGCAAGTGTATCATAGACAACTTGCTTATTGTATATCACAGTTTGTGCAGAAGGAACCTATGCTTGGAGGTGTTGTTGTTAGAGGAATTTTGAGGTATTGGCCTGTTACAAATTGTCAGAAGGAGATTCTTTTGATCGGAGAGTTGGAAGATTTGGTTGAGAATTTGGATCCTGATCAGTATCGTAAGTTGGCGTTGCCGATATGTACTCAGATTACAAAATGCATCAACAGTTGGAATTCTCAGGTAGCTGAGAGGGCATTGTATGTGTGGAACAATGAACAGTTCTATAAGATGGCAACAACAGGAACAGTTGAAGTGCTTCCAGTGATAGTAGAAGTTAAAGAATCAGTGGCACATCAAGAAGATATGAAGAGAAAAAAGAGATGGGAGAGAATTGAATTGGCTGCTTCTAAGAATCAGTTTGTTAATCCACAAAGATATATTTGTGTTTCCCACTGA 1206 0.3881 MSNQKTLQDFFVQEKPHFSTPSSSPTSGNEEILSTVSYCTFVFTFTDPLESPAQRDSKRLQLSRLIAMLKTSKKPVHEKVIGPLVLMIKANLFRPLPPPTNPSAISEYLDEEDPISIPSPLWSHLQIVYEILLRLVNSTDTKILRNYIDHSFLLNLLSLFQSEDPRERESLKNVYHKIYSKLVCDRSAMRKSMTDVLLNYVFETEKHSGIADLLEIWGTIVNGFTVPLKEEHKLFLMRVLIPLHKTKGMQVYHRQLAYCISQFVQKEPMLGGVVVRGILRYWPVTNCQKEILLIGELEDLVENLDPDQYRKLALPICTQITKCINSWNSQVAERALYVWNNEQFYKMATTGTVEVLPVIVEVKESVAHQEDMKRKKRWERIELAASKNQFVNPQRYICVSH 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00166 401 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 12 364 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa3g00166 401 Gene3D - 22 367 IPR011989 -
Vifa3g00166 401 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 22 366 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa3g00166 401 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 25 365 - -
Vifa3g00166 401 SUPERFAMILY ARM repeat 31 367 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00166 Vifa-Chr3 12880898 12882832 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00166 K11584 - gmx:100802007 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00166 3 12880898 12882832 Vifa3g00166 3 12880898 12882832 ECH