Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00164 ATGAACAAGAGGCCAAGAGACACCACCGTCTACAAGCCCCTTCGCGATCTCTCCAATCGCGAACTCGGCGAGTTACCCGCCAGAATTTTCCCCAACCGTCTCGCCGCCTCCGAGGATCTTGTTCTTCGACTTGATGTATTCAGAAAACTGGACAAGCACAGAGGCTGTGTGAACACTGTATGCTTCAATGCAGATGGTGATGTTCTGGTTTCAGGTTCTGATGACAGGAGGATTATTCTCTGGGATTGGGAAACTGGTCGTACTAGGCTCTCTTTCCATTCCGGTCATAGTAACAATGTTTTCCAGGCTAAGTTCATGCCTCACTCCGATGATCGAACCATTGTCACTTGTGCTGCTGATGGTCAGGTGAGGCAAGCTCAAATTCTTGAACAAGGAGATGTGGAAACTAAGTTATTGGCCAAGCATTTAGGACGGGCTCATAAGTTGGCTATTGAGCCTGGTAGCCCTCATATATTTTACACCTGCGGTGAAGATGGATTAGTACAGCATTTTGATCTTAGAACCGGGACTGCAACAGAACTTTTTACTTGCAAGCCACTTGGGGATAAATGGAGTTACGTGCCAGTCATCCTTCTTAATACAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCGGTTGCTGGGTCTGATGAATATACTCGGCTTTTTGATATCCGCAAATATAAGTGGGATGCATCAACTGATTTTGGCCAACCGATTGACTACTTTTGCCCTCAACACTTGATTGGCGATCAGCGAGAAGGAATAACAGGCCTGGCCTTTTCTGAACAAAGGGAGCTTCTTGTGTCCTACAATGATGAATATATTTACCTTTTTACACAAGATATGGGTTTGGGACCGGATCCTATTCCTGGGTCCCCTATTTCTGTAAATAGTGATACAAGTGACATGGGTGATAATAGTTCTGTGCATTCTCCACCAAACATGGATGCTAACGATAAAGTCACCCCTCAAGTTTTTAAGGGACATAGGAATTGTGAGACAGTAAAGGGTGTAAGTTTTTTTGGGCCTAATTGTGAGTATGTGGTGAGTGGATCAGACTGTGGTCGGATTTTCACATGGAAGAAGAAAGGTGGTCAGCTTATTCGTGTCATGGAAGCAGACAAGCACGTTGTGAACTGTATTGAGTCTCATCCTCATACAACGGTTCTTGCAAGCAGCGGCATTGAGCATGACATCAAGATATGGACTCCGAAGGCCCTTGAGAAAGCTACTTTGCCTAAAAATATTGAGCAGGTTATATTTGGTGAAAATCGTTGGTTTGAGAGTGATGACGATGATGATAGTGACGATGACAATGAGGATGACGATATGTTTGATGATGATGATGATATGTTTGATGATGATGATATGTTTGATGATGATGATGATGATGATGGTAGTGGTGATGATGATATTGATGAAGATAATGACGATGAAGGTTGTGACGATGAGGAGGATATTGATGAATTTGACGAAGGAGGTTATGTCAATGATTGTAATGATGATGAGAACAATGGTAAAGCCAAGGCTAGGGACTGGATGTACCAGATAGCTTCTCCAGACGACCTGATGATGCAACTGTTTTCATTTCCAAGACGAAGGGTTAGGACGGAAAACAGTGCAGAGCAGTCAACTGCAGATCGAGAATTTCTAGAGTTGATATTGACATTCAATACTATTAGTGACGATACCACTGATGATGATGATGGTGGTGATGATGATGGAGATGCAAGCAACCAAGATGACTTGTTCAGTTGA 1764 0.4325 MNKRPRDTTVYKPLRDLSNRELGELPARIFPNRLAASEDLVLRLDVFRKLDKHRGCVNTVCFNADGDVLVSGSDDRRIILWDWETGRTRLSFHSGHSNNVFQAKFMPHSDDRTIVTCAADGQVRQAQILEQGDVETKLLAKHLGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTATELFTCKPLGDKWSYVPVILLNTIAIDPRNPNLFAVAGSDEYTRLFDIRKYKWDASTDFGQPIDYFCPQHLIGDQREGITGLAFSEQRELLVSYNDEYIYLFTQDMGLGPDPIPGSPISVNSDTSDMGDNSSVHSPPNMDANDKVTPQVFKGHRNCETVKGVSFFGPNCEYVVSGSDCGRIFTWKKKGGQLIRVMEADKHVVNCIESHPHTTVLASSGIEHDIKIWTPKALEKATLPKNIEQVIFGENRWFESDDDDDSDDDNEDDDMFDDDDDMFDDDDMFDDDDDDDGSGDDDIDEDNDDEGCDDEEDIDEFDEGGYVNDCNDDENNGKAKARDWMYQIASPDDLMMQLFSFPRRRVRTENSAEQSTADREFLELILTFNTISDDTTDDDDGGDDDGDASNQDDLFS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00164 587 MobiDBLite consensus disorder prediction 295 319 - -
Vifa3g00164 587 MobiDBLite consensus disorder prediction 425 509 - -
Vifa3g00164 587 MobiDBLite consensus disorder prediction 429 500 - -
Vifa3g00164 587 MobiDBLite consensus disorder prediction 564 581 - -
Vifa3g00164 587 MobiDBLite consensus disorder prediction 560 587 - -
Vifa3g00164 587 Gene3D - 38 407 IPR015943 GO:0005515
Vifa3g00164 587 SMART WD40_4 242 281 IPR001680 GO:0005515
Vifa3g00164 587 SMART WD40_4 132 172 IPR001680 GO:0005515
Vifa3g00164 587 SMART WD40_4 321 363 IPR001680 GO:0005515
Vifa3g00164 587 SMART WD40_4 43 82 IPR001680 GO:0005515
Vifa3g00164 587 SMART WD40_4 192 225 IPR001680 GO:0005515
Vifa3g00164 587 SMART WD40_4 366 405 IPR001680 GO:0005515
Vifa3g00164 587 SMART WD40_4 85 127 IPR001680 GO:0005515
Vifa3g00164 587 SUPERFAMILY WD40 repeat-like 42 404 IPR036322 GO:0005515
Vifa3g00164 587 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 15 488 IPR045151 -
Vifa3g00164 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 87 - -
Vifa3g00164 587 Pfam WD domain, G-beta repeat 368 404 IPR001680 GO:0005515
Vifa3g00164 587 Pfam WD domain, G-beta repeat 48 82 IPR001680 GO:0005515
Vifa3g00164 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515
Vifa3g00164 587 MobiDBLite consensus disorder prediction 292 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00164 Vifa-Chr3 12403289 12405847 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00164 K11804 - gmx:100794236 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00164 3 12403289 12405847 Vifa3g00164 3 12403289 12405847 ECH