Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05661 ATGGCTTGTTCTACTGATAGCATTGTTTTGATTGATGATGATACAGTGAATTGGCTGAGACATGTTGGAAGACAGCTATCCAAAAACTTGACTTCTTCAGTTGATAAGCTTCTTCAATTACTTGATAAATTGGAGCTGGTATTATCAAACTTGGATCATGATCCACCCAAGCGAATTCAAGGATCACTTGTACCTCCAATGAAGACATTGATTTCTGATCAACTTTTGAGACACGCAGACGAGGATGTTAAGATTTCTGTTACAGCTTGTCTCACTCAGATTACAAGAATTACAGCACCGGATGCACCTTATGACGATGAACTGATGAAGGAATTTTTGAAGCTTGCCGTGTCAGCTTTTGAAAAATTGTCACATGTATCTGGCCGCAGCTATGAAAAAGCAATTAGCATACTTGAAAATTTTTCAAAGATCAAAATGTTCTTGATTATGCTGGACCTTGAGTGTGATGACCTGGTTATGGAGATGTTTCAACAGTTCCTGAGAATTATAAGGTCAAACCATCCGAGTAATGTAATTGAATCAATGGAGAATGTAATGACCGGGATACTTGACGAAAGCGAAGATATTTCCTTGGATCTTCTTAGGCCTTTGTTAGATAGTGTAAAAAAGGAGAACCAGACTATTTCACCTATTTGTTGGACCTTGGGGGAGAAAGTAATTACAAATTGTGCCTTCAAACTTAAACCTTATCTCATGCAAGCAGTTGTATCCTCTGGAAGAACGCTCGATATGTATCCGCAAATAGTAACTTCTATTTGCCAGAATCAACCTGAATCACAAGAACACATTCAATCATTAGTTCAGGCAGGTGAAAACAATCTTGTTGTACCTAAAGATGCTCATGAAGAACCCTGCGACGTGACAAAAGGGCTTGAAACAGTTAATACTTGTGTGAGGGATGTCCAAATTGTAGATGACACGGAGGCAAATATACGGAGTACTAGTGCTGCTTCTATGGACGGAGAAGTTGCAGAAAGTTCTGGTTCAAAAAGGAAACTGCATTCATGTACTAAGAACTCCGAACAAACAAATCCGAAAACAAGTACAAGCAATTTAGAGTTAGTTCAGGAAATGAACTCTGAAACTCAACTGGATATTGTTCCAAGAAAGAGAGCCCGTAAGCCAAATTCTTTAATGAATCCAGAGGAAGGATATGATCACTCTTGGATTTGTAAGGAATCAAGTATCGTAAAATCTTCTCAACCCAAAAGCGCTCGTGATAATGGCGATGCTCTTGCACTTTGTAAAAACCCTACTTCCACAAAGGGTAAAACACTGTCAAATCCCAAAACTGTCGACCAAACACTATTTTCTGAGGTTAAGAATGGGAAAGTATCTATAAAAACATCGGATATAGGCAGTAGCTTTCTATCTGGTGAAAATCCTGCTTCTATTGAGGGAACTGTAGTGTCAAATCCAGAAGATGTGAGCAATGCTTGTGAAGCTTTAGTTTCTAAATCTAAAAAAGATGAGAATACAAATGTTGATTCTCCTACAAATCATAACATTCGTAATGGAAGCTTCCTCAAAAGACGCAGGCCAAGGAAAAGTATTAGCATTAGGAAGTTAAAGGATGATAATTTGAGTCCTTTACTTGAGAAGACTTCTTCAAAATCCCCTGGTGTTAGAATGGAAAATATATCTAAAGTAAGGAAGAAGCCTGAAGTGAAACATGAGGCACCTGTCAGAACGATTAAATTATCTATAAAGTTTGACGGGAAAGTTGTTGTGCCTCCTACATCAATAGTTGCTAGCACGAAATCCGAGAATTTTTGTGAAGACGAGGGAAAATCCTCTTCTCAAATAGAAGTTAACAAAAGGAGGAGACAAACCGCTACTTCTAATAAAGGTTTCAACAAATCGTCTGCTATGAAGGGACATGAACCGATAAAACTTGGTAACTCCTTGGTTGGTAAAAGGATCAAAATCTGGTGGCCATTGGACAAGATATATTATGAAGGTGTTGTCGAGGCCTATGACCATGTCAGAAGAAAGCACAAGATTTTGTACGACGATGGTGTTACGGAACAGTTAAATCTCAATAAAGAGCGTTGGGAGTTAGTTAATGTTTCACTAGAAGAAGGACTTGGACTTAAAGAAGCTTGTAGAAGCATATGA 2139 0.3829 MACSTDSIVLIDDDTVNWLRHVGRQLSKNLTSSVDKLLQLLDKLELVLSNLDHDPPKRIQGSLVPPMKTLISDQLLRHADEDVKISVTACLTQITRITAPDAPYDDELMKEFLKLAVSAFEKLSHVSGRSYEKAISILENFSKIKMFLIMLDLECDDLVMEMFQQFLRIIRSNHPSNVIESMENVMTGILDESEDISLDLLRPLLDSVKKENQTISPICWTLGEKVITNCAFKLKPYLMQAVVSSGRTLDMYPQIVTSICQNQPESQEHIQSLVQAGENNLVVPKDAHEEPCDVTKGLETVNTCVRDVQIVDDTEANIRSTSAASMDGEVAESSGSKRKLHSCTKNSEQTNPKTSTSNLELVQEMNSETQLDIVPRKRARKPNSLMNPEEGYDHSWICKESSIVKSSQPKSARDNGDALALCKNPTSTKGKTLSNPKTVDQTLFSEVKNGKVSIKTSDIGSSFLSGENPASIEGTVVSNPEDVSNACEALVSKSKKDENTNVDSPTNHNIRNGSFLKRRRPRKSISIRKLKDDNLSPLLEKTSSKSPGVRMENISKVRKKPEVKHEAPVRTIKLSIKFDGKVVVPPTSIVASTKSENFCEDEGKSSSQIEVNKRRRQTATSNKGFNKSSAMKGHEPIKLGNSLVGKRIKIWWPLDKIYYEGVVEAYDHVRRKHKILYDDGVTEQLNLNKERWELVNVSLEEGLGLKEACRSI 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05661 712 SUPERFAMILY ARM repeat 19 228 IPR016024 -
Vifa2g05661 712 MobiDBLite consensus disorder prediction 612 628 - -
Vifa2g05661 712 MobiDBLite consensus disorder prediction 495 523 - -
Vifa2g05661 712 Pfam Sister chromatid cohesion protein PDS5 protein 35 240 - -
Vifa2g05661 712 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 373 696 IPR039776 GO:0007064
Vifa2g05661 712 SUPERFAMILY Tudor/PWWP/MBT 641 683 - -
Vifa2g05661 712 MobiDBLite consensus disorder prediction 319 356 - -
Vifa2g05661 712 MobiDBLite consensus disorder prediction 601 633 - -
Vifa2g05661 712 CDD Tudor_Agenet_AtEML-like 644 694 - -
Vifa2g05661 712 Gene3D - 641 691 - -
Vifa2g05661 712 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05661 Vifa-Chr2 1679695066 1679699325 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05661 - - psat:127100896 1097.8