Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05657 ATGAAAACCCTAGAACGGGAGAGATTTCATACCCAAAAAATCTCTTCCTTCTATCTTCCCCCATTCTCTCCATTCTCTCTCAACACTTCCCAATCTTTCCCTCATTCAATTCAAATTTCCAATTTTCAAGATCCGGTGAATTTTTCATTATTTTATGGTAAGAAGATTGTGATGCCGCTAGGTTTACCGCAAAGCGATTCCATTCAGATTCGCGAAGTGTGGAACGATAATCTTGAAGCAGAGTTCGCTTTAATCCGGGAAATCGTCGATGTTTATCCTTACATAGCAATGGATACAGAATTCCCTGGAATTGTTCTTCGTCCGGTTGGTAGTTTCAAGAACAGTTACGATTTTCATTATCAAACCCTAAAAGACAACGTGGACATGCTCAAGCTTATTCAATTGGGGCTCACTTTCTCCGATGAGCAAGGCAACCTTCCGACTTTCAGCCATAAGGATGACGATGATAAGTTGTTCTGTATCTGGCAATTCAATTTCAGAGAGTTCAATGTGAATGAGGATATTTTTGCGAATGATTCAATAGAGCTTTTGAGACAGTGTGGGATTGATTTCGAGAAGAATAACGAGAACGGGATTGATGCCAGGAGATTCGGCGAGCTTTTGATGTCTTCTGGGATTGTTTTGAATGATAGTGTTCATTGGGTGACTTTTCACAGTGGGTATGATTTTGGTTATTTGTTGAAGTTATTGACTTGTCAGGATTTGCCTGAAACACAAGTTGGGTTCTTTAATTTGATCAACATGTATTTCCCTACTGTGTATGATATCAAACATTTGATGAGGTTTTGCAATAGTCTTCATGGAGGCTTGAACAAGCTTGCGGAGTTGTTGGAGGTTGAGAGAGTTGGGGTTTGTCATCAAGCGGGCTCCGACAGTTTGCTCACGTCGTGTACATTCATGAAATTGAAAGAAAATTTCTTTAGTGGATCTTTGGAAAGATATGCAGGGGTATTGTATGGGTTAGGTCTTGAGAATGGACAGAGTACTCATTAA 1014 0.3994 MKTLERERFHTQKISSFYLPPFSPFSLNTSQSFPHSIQISNFQDPVNFSLFYGKKIVMPLGLPQSDSIQIREVWNDNLEAEFALIREIVDVYPYIAMDTEFPGIVLRPVGSFKNSYDFHYQTLKDNVDMLKLIQLGLTFSDEQGNLPTFSHKDDDDKLFCIWQFNFREFNVNEDIFANDSIELLRQCGIDFEKNNENGIDARRFGELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCQDLPETQVGFFNLINMYFPTVYDIKHLMRFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFMKLKENFFSGSLERYAGVLYGLGLENGQSTH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05657 337 FunFam Putative CCR4-associated factor 1 7 61 332 - -
Vifa2g05657 337 Pfam CAF1 family ribonuclease 73 199 IPR006941 -
Vifa2g05657 337 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 68 329 IPR039637 GO:0004535|GO:0030014
Vifa2g05657 337 SUPERFAMILY Ribonuclease H-like 63 330 IPR012337 -
Vifa2g05657 337 Gene3D - 56 331 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05657 Vifa-Chr2 1678241609 1678244448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05657 K12581 - gmx:100789409 511.916