Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05624 ATGGATACATCTGACTGGAGAGCTCAACTGCCACCCGATTCACGCTTAAAGATTTCCGATAAAATAATGGACACATTAAAAAGACATCTTCCTGTTTCTGGTTCTGAGGGTTTACTTGAACTTCAAAAAATTGCTCAAAAGTTTGAAGGCAAAATATTTATGTCTGCAATAAGTCAGTCTGATTATTTACGGCAAATATCCTTAAAGATGCTATCGATGGAGACTAAATCTCCCAACACCATTACCAACAATATACTGCCTAGTCAAGGAAATTTTGGAATAGCTCCTATTCCAGGAGGAGCTGTGTCTAATGACCTTAGGAATCAAAACAATATTGGGTTTAACTCCACTTACAAGACCAATATTTCCGCTGAGGTGCGACCAAGCTCTTCTACGCTCTCATTTGGACAGGAGATAGATTATCCGACACAGCCTGGCCGTTTTAAGCGAAAGAAGGTTCCTTTGGAGAATTCTTCATATTCTTCTGAAAGGACGGAGTCTGGAATCCCCAAAGATTCTTCTACTACAATTGGTACTCATGACCATAATAACTTGTTTCTTCAAAGTGAAGTTTTTAGTTTTGCAGGACAAATGGAGCCTTCTAAAGTTGTTTCACATGGTTTGGAGAATATCTTTGATGTCATGGCCACTAATACGATGTGGCTCAACTCTGTTGCTACCGAGGCTAAAGGTGTTTTTAAAACTTGGCCTCATGAGAAGATGAAATATGAAGAAGACCTCCAACGTCTGACCGACGAATTGGTGAATAAAGATGAGTTAATTGCTCAACTAAAGGAAGAGAACACCAAGTTGGCAACCAAGTCGGAGAAGGAAAAGTCTGAGCTCTCATCCCAACTAGAATCTTGGAAGAAGGCTTGTGAAAATGCGAACACATTGCTGAAAGATGCCAATAAATCACTAGTGGAGGTTCGGAAGAAAAACTCTGATCTTGGAAAATCTTTTGGCAAGTTAAGTAAAATAAAAACAGAAGAAGTTTGA 999 0.3924 MDTSDWRAQLPPDSRLKISDKIMDTLKRHLPVSGSEGLLELQKIAQKFEGKIFMSAISQSDYLRQISLKMLSMETKSPNTITNNILPSQGNFGIAPIPGGAVSNDLRNQNNIGFNSTYKTNISAEVRPSSSTLSFGQEIDYPTQPGRFKRKKVPLENSSYSSERTESGIPKDSSTTIGTHDHNNLFLQSEVFSFAGQMEPSKVVSHGLENIFDVMATNTMWLNSVATEAKGVFKTWPHEKMKYEEDLQRLTDELVNKDELIAQLKEENTKLATKSEKEKSELSSQLESWKKACENANTLLKDANKSLVEVRKKNSDLGKSFGKLSKIKTEEV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05624 332 Coils Coil 240 313 - -
Vifa2g05624 332 MobiDBLite consensus disorder prediction 158 178 - -
Vifa2g05624 332 Gene3D Coactivator CBP, KIX domain 5 83 IPR036529 GO:0003712|GO:0006355
Vifa2g05624 332 FunFam Mediator of RNA polymerase II transcription subunit 15a 5 83 - -
Vifa2g05624 332 Pfam KIX domain 4 82 IPR036546 -
Vifa2g05624 332 SUPERFAMILY Kix domain of CBP (creb binding protein) 3 76 IPR036529 GO:0003712|GO:0006355
Vifa2g05624 332 MobiDBLite consensus disorder prediction 154 178 - -
Vifa2g05624 332 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 2 84 IPR044661 GO:0003713|GO:0031490
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05624 Vifa-Chr2 1667667736 1667670199 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05624 K14972 - tpra:123921505 366.696