Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05621 ATGGATTCGAATAATTGGATGCCTAATCAGGGTTCTGAACCCACTCTAGACTCCGTTGATTGGAGAATTCAACTGCATCCTGAATCCCGCCAAAGAATTGTCAACAAAATAATGGACACATTAAAAAAACATCTTCCCGTATCTGGGAATGAGGGATTACTTGAACTTCGGAAGATTGCTCAAAGGTTTGAAGATAAGATTTATGCTGCTGCCACAAGCCAGTCTGATTATCTCCGGAAGATTTCGATGAAAATGCTTACTATGGAGACCAAAACTCAAAGCACCATTGCCAGCAATATGCCATCAAGTGAAGGAGGTCCTAGCAATAATCCGCCCGATCAAGGACAACAACACCCTAATCCTCGTCAACAGCTTCTACCCCAAACCATTCAAAATCATGTTGCACCTCAATCTAACCTGCCATCGGTATCGGCTCTATCCCAGACTCCCAGCCAGAATATTAGTCAAAATTCCAACACACAACAACCTGGGCAAAATTCTGCGAGTAATTCTATTGGCCAGAATTCCAATATACAGGGTATGTTTCCTGGTTCTCAGAGACAAATGCAAGGTAGGCAGCAAGTTGTTCCCCCGCAGCAACAGCAACAGCAACAACCCCAGAATCAACAGATTCTTTACCAGCAGCAGCAACAGGTTATGAAGCATAAGCTGTCTCAGATGCAGCAGCAACAACAACAGCAGAACCTTCTGCAACCAAATCAATTAAATAACTCTCAACAATCTGTTATGCAAACATCATCTGCTATGCAGTCTTCGACGATGCAATCGTCTCTATCCAGTCTTCCACAAAATCAGCAGTCTAACAATGTTCAACAGTCAGCGCAGTCTAGGCTTCAGCAACATTCCCAAATTATTAGGCAGCAACAGCAACAGAATTCTATTGCTCAACAGCAACAGAATTCTATTGCTCAACAGCAACAAACACCAATGTCTCAACAGTCAATCTTGCCTGCTCAGCAACAGCAGCAGTTTGGAGGGCCTCAATCAAATGTAACAAATGGGCAACATGCTCAGATGCTTGGACAACAGAACAATGTTGGTGACACACTTAAGTCCCAGAGGTTGCATCCACAACAGAATAATCTCATGAACCCGCAACAGCGACAACAACAACAGTTAATAAATCAGCAAAACAATCTAACAAATATACATCAACAACAGTCGGGAAATAATGTACCAGGGTTACAGCAACAGCAGTTTGGAACTGATTCTGGCAACCAAGGCATCCAAACAAGCCATCATTCTGCACACATGTTGCAACAACCAAAGGTTTCAATGCAACAACAATTGCAACACAATGGGTCAAAGTTGCTGCCATCTCAGTCGCAGCAGTCCCAGCCACAGGCTTCACAACAGCAATTAATTTCGCAGGTTCACAATCAGCCTGCACAGATGCAACAACAAATGGGTTTGCAGCAGCAGCCAAATTCTTTGCAACGAGATATGCAGCAAAAACTCCAAGCATCAGGGTCTTTACATCAACAGCAAAATGTTCTTGATCAGCAAAAACAGTTATATCAATCCCAAAGAGCTCTTCCTGAAACATCCACAACTTCTGTAGATTCTACAATACAGACTGCTCAACCAAGTGGGGGTGATTGGCAAGAAGAACTATACCAAAAGTTGCAAACCATGAAAGAAAATTACTTGCCAGATCTGAATGAAATATTCCAAAAAATTGCTATGAGATTTCAGCAGTATGACTCTAATCCTCAACAGCCAAAGGCAGATCAGATGGACAAGTTAAGGCAATATAGAATGATGTTGGAACGCATGATAACATTCCTACAGATTCCTAAGAACCTCATTACGCCTAGTATCAAGGAAAAATTGGGAGCATATGAAAAGCAGATTGTAAGTCTCATAAATTCCTTTAGGCCCAGGAAACCGTTGCAACCAGGGCAGCTCCCCCCAACTCATATGACTTCATTGCCACAGTCACAATCTCAAGTTACTTCAGTACAGTCTCATGAAAATCAAATGATCTCTCAGATGCAGCCATCAAACTTACAAGGTTCTGCAGCAACTATACAGCAGAACAATGCTGCAAGCTTGCAGCATAATTCTATGTCTGGTTTGTCAACAACACAACAAAATATGTTGAATACAATTCAACCAAGTAATAATGCAGACGCTGGGCAAGGAAATTCTGCGAACTCTCTGCCACAGGTTCCCTTGAGCTCCCTTCAACAAAACAATGTTAGTACTCCTCAACAGACCAACATCAATTCATTATCATCACAAGGTGGGGTGAATGTGATCCAACCCAATCTAAATACCCATCAGTCAGGTTCCACTATGCTTCAGCCCCAACTGAAACATCAGGAACATCAGATGCTGCAGAATCAGCAGTACAAACAACAATATCAGCAGCAAGGACAATTGATGCAAAGGCAGCAGATCCTACCGCAGCGACAGCAGCTACACCAGCCAGGAAAGCAACAGCTGTCAGTACAGTCTCAGATTAACCAAATGAACGATATAAATGATATGAAAATGCGACAAGGAATAGGTGCTAAGCCAGGGGTATATCAGCAACATATTGCCTCAGGTCAAAACTCAGCCTATTCCCATCAACAGTCTAAACAAGGGAGTCCATTTCAGGTTTCTTCACCCCAACTCTTTCAGGCTGCGTCTCCTCAAATTCCACAACACTCATCTCCCCAAGTTGACCAACAAACTCAACAACAGTCTCTAGTAAAAGTTGTAACTCCTCTGCAATCTTCTAATTCACCTTTCGGAGTCCCTACTCCTTCACCTCCCATGGCTCCATCTCCTATGCTAGTAGATTCTGAGAAGTTCGTTCCTGGTGTTTCATCATCAAGTGCTGCCAACGTTGGACAACATATAGGGGGTGCAGCAGCACCAGCTCAATCCCTTGCCATTGGGACTCCGGGAATATCAGCCTCTCCTTTATTAGCAGAATTCAGTGGTCCAGATTGTGCATATTTTAATGCTTTCGCAGCTACTTCTGGCAAGTCAACTGCAGAGCAACCTATTGATCGTCTAATAAGAGCGGTGCAATCAATGTCAACTGAAACATTAACTGCTGCTGTCAATGATATCAGTTCAGTTGTCAGCATGAGTGATAGGATAGCAGGATCCGCTCCAGGTAATGGATCAAGAGCCGCTGTTGGCGAGGATTTGGTTTCCATGACTAATTGTCGTCTTCAGGCTAGAAATTTTATCACTCAAGATGGTACTAATGGAATCAGGAAGATAAAGCGCTATACCACTGCTAGACCGTTGAATATTAAGTCATCTGCTGTGAGCAAGAATGACAGTATAATGCAGTTATCTGCTTCAGAGGCTTCTCAGCAGGAGTCAACTGCAACAACCAATTTCAAGAAACCAAAGGCTGAGGCTACTCATGCCCTTTTGGAAGAAATACAGCAAATTAATCGCAGACTTATTGACACAGTAGTAGAAATAAGTGACAGAGATGTTGATCCAACTGCAGCTGCCATTGCTGCTGCTGAAGGGACAGAAGGGACCGTTGTCAAATGTTCTTTCATTCCTGTGGCTCTCAGCCCATCTTTAAAATCTCATTATGCTTCACTACAGTACCCTATTCAGCCTCTGCGCTTACTGGTTCCTTCAAATTATCCTAATTCTTCTCCCATATTCCTAGACAGGTTTTCAGTTGAATCACGTAACGGGAACGAAGATCTTTCAGAGAAAGCGAAATCAAAGTTTAGCATGTCCTTACGTAATTTTTCTCAACCAATGTCTCTGAAAGATATAGTGAAGACTTGGGATGTTTCTGCTCGTGGTGTTGTTTCTGAATATGCACAACAATTTGGTGGAGGAACATTCAGCTCAAAGTATGGATCATGGAAAGATATCTTGACCGCATAA 3879 0.4277 MDSNNWMPNQGSEPTLDSVDWRIQLHPESRQRIVNKIMDTLKKHLPVSGNEGLLELRKIAQRFEDKIYAAATSQSDYLRKISMKMLTMETKTQSTIASNMPSSEGGPSNNPPDQGQQHPNPRQQLLPQTIQNHVAPQSNLPSVSALSQTPSQNISQNSNTQQPGQNSASNSIGQNSNIQGMFPGSQRQMQGRQQVVPPQQQQQQQPQNQQILYQQQQQVMKHKLSQMQQQQQQQNLLQPNQLNNSQQSVMQTSSAMQSSTMQSSLSSLPQNQQSNNVQQSAQSRLQQHSQIIRQQQQQNSIAQQQQNSIAQQQQTPMSQQSILPAQQQQQFGGPQSNVTNGQHAQMLGQQNNVGDTLKSQRLHPQQNNLMNPQQRQQQQLINQQNNLTNIHQQQSGNNVPGLQQQQFGTDSGNQGIQTSHHSAHMLQQPKVSMQQQLQHNGSKLLPSQSQQSQPQASQQQLISQVHNQPAQMQQQMGLQQQPNSLQRDMQQKLQASGSLHQQQNVLDQQKQLYQSQRALPETSTTSVDSTIQTAQPSGGDWQEELYQKLQTMKENYLPDLNEIFQKIAMRFQQYDSNPQQPKADQMDKLRQYRMMLERMITFLQIPKNLITPSIKEKLGAYEKQIVSLINSFRPRKPLQPGQLPPTHMTSLPQSQSQVTSVQSHENQMISQMQPSNLQGSAATIQQNNAASLQHNSMSGLSTTQQNMLNTIQPSNNADAGQGNSANSLPQVPLSSLQQNNVSTPQQTNINSLSSQGGVNVIQPNLNTHQSGSTMLQPQLKHQEHQMLQNQQYKQQYQQQGQLMQRQQILPQRQQLHQPGKQQLSVQSQINQMNDINDMKMRQGIGAKPGVYQQHIASGQNSAYSHQQSKQGSPFQVSSPQLFQAASPQIPQHSSPQVDQQTQQQSLVKVVTPLQSSNSPFGVPTPSPPMAPSPMLVDSEKFVPGVSSSSAANVGQHIGGAAAPAQSLAIGTPGISASPLLAEFSGPDCAYFNAFAATSGKSTAEQPIDRLIRAVQSMSTETLTAAVNDISSVVSMSDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFITQDGTNGIRKIKRYTTARPLNIKSSAVSKNDSIMQLSASEASQQESTATTNFKKPKAEATHALLEEIQQINRRLIDTVVEISDRDVDPTAAAIAAAEGTEGTVVKCSFIPVALSPSLKSHYASLQYPIQPLRLLVPSNYPNSSPIFLDRFSVESRNGNEDLSEKAKSKFSMSLRNFSQPMSLKDIVKTWDVSARGVVSEYAQQFGGGTFSSKYGSWKDILTA 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05621 1292 MobiDBLite consensus disorder prediction 710 759 - -
Vifa2g05621 1292 MobiDBLite consensus disorder prediction 633 667 - -
Vifa2g05621 1292 Coils Coil 278 305 - -
Vifa2g05621 1292 FunFam Mediator of RNA polymerase II transcription subunit 15a 20 98 - -
Vifa2g05621 1292 MobiDBLite consensus disorder prediction 244 341 - -
Vifa2g05621 1292 MobiDBLite consensus disorder prediction 643 667 - -
Vifa2g05621 1292 MobiDBLite consensus disorder prediction 884 903 - -
Vifa2g05621 1292 Pfam KIX domain 19 98 IPR036546 -
Vifa2g05621 1292 MobiDBLite consensus disorder prediction 140 208 - -
Vifa2g05621 1292 MobiDBLite consensus disorder prediction 91 122 - -
Vifa2g05621 1292 MobiDBLite consensus disorder prediction 391 539 - -
Vifa2g05621 1292 SUPERFAMILY Kix domain of CBP (creb binding protein) 20 94 IPR036529 GO:0003712|GO:0006355
Vifa2g05621 1292 Coils Coil 213 233 - -
Vifa2g05621 1292 Gene3D Coactivator CBP, KIX domain 19 98 IPR036529 GO:0003712|GO:0006355
Vifa2g05621 1292 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 846 1282 IPR044661 GO:0003713|GO:0031490
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05621 Vifa-Chr2 1667249448 1667258034 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05621 K14972 - gmx:100805336 1357.81