Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05620 ATGGATTCGAATAATTGGATGCCTAATCAGGGTTCTGAACCCACTCTAGACTCCGTTGATTGGAGAATTCAACTGCATCCTGAATCCCGCCAAAGAATTGTCAACAAAATAATGGACACATTAAAAAAACATCTTCCCGTATCTGGGAATGAGGGATTACTTGAACTTCGGAAGATTGCTCAAAGGTTTGAAGATAAGATTTATGCTGCTGCCACAAGCCAGTCTGATTATCTCCGGAAGATTTCGATGAAAATGCTTACTATGGAGACCAAAACTCAAAGCACCATTGCCAGCAATATGCCATCAAGTGAAGGAGGTCCTAGCAATAATCCGCCCGATCAAGGACTTGTTTTACAGTCTCAAGTTCTTAATCCAGGACAACAACACCCTAATCCTCGTCAACAGCTTCTACCCCAAACCATTCAAAATCATGTTGCACCTCAATCTAACCTGCCATCGGTATCGGCTCTATCCCAGACTCCCAGCCAGAATATTAGTCAAAATTCCAACACACAACAACCTGGGCAAAATTCTGCGAGTAATTCTATTGGCCAGAATTCCAATATACAGGGTATGTTTCCTGGTTCTCAGAGACAAATGCAAGGTAGGCAGCAAGTTGTTCCCCCGCAGCAACAGCAACAGCAACAACCCCAGAATCAACAGATTCTTTACCAGCAGCAGCAACAGGTTATGAAGCATAAGCTGTCTCAGATGCAGCAGCAACAACAACAGCAGAACCTTCTGCAACCAAATCAATTAAATAACTCTCAACAATCTGTTATGCAAACATCATCTGCTATGCAGTCTTCGACGATGCAATCGTCTCTATCCAGTCTTCCACAAAATCAGCAGTCTAACAATGTTCAACAGTCAGCGCAGTCTAGGCTTCAGCAACATTCCCAAATTATTAGGCAGCAACAGCAACAGAATTCTATTGCTCAACAGCAACAGAATTCTATTGCTCAACAGCAACAAACACCAATGTCTCAACAGTCAATCTTGCCTGCTCAGCAACAGCAGCAGTTTGGAGGGCCTCAATCAAATGTAACAAATGGGCAACATGCTCAGATGCTTGGACAACAGAACAATGTTGGTGACACACTTAAGTCCCAGAGGTTGCATCCACAACAGAATAATCTCATGAACCCGCAACAGCGACAACAACAACAGTTAATAAATCAGCAAAACAATCTAACAAATATACATCAACAACAGTCGGGAAATAATGTACCAGGGTTACAGCAACAGCAGTTTGGAACTGATTCTGGCAACCAAGGCATCCAAACAAGCCATCATTCTGCACACATGTTGCAACAACCAAAGGTTTCAATGCAACAACAATTGCAACACAATGGGTCAAAGTTGCTGCCATCTCAGTCGCAGCAGTCCCAGCCACAGGCTTCACAACAGCAATTAATTTCGCAGGTTCACAATCAGCCTGCACAGATGCAACAACAAATGGGTTTGCAGCAGCAGCCAAATTCTTTGCAACGAGATATGCAGCAAAAACTCCAAGCATCAGGGTCTTTACATCAACAGCAAAATGTTCTTGATCAGCAAAAACAGTTATATCAATCCCAAAGAGCTCTTCCTGAAACATCCACAACTTCTGTAGATTCTACAATACAGACTGCTCAACCAAGTGGGGGTGATTGGCAAGAAGAACTATACCAAAAGTTGCAAACCATGAAAGAAAATTACTTGCCAGATCTGAATGAAATATTCCAAAAAATTGCTATGAGATTTCAGCAGTATGACTCTAATCCTCAACAGCCAAAGGCAGATCAGATGGACAAGTTAAGGCAATATAGAATGATGTTGGAACGCATGATAACATTCCTACAGATTCCTAAGAACCTCATTACGCCTAGTATCAAGGAAAAATTGGGAGCATATGAAAAGCAGATTGTAAGTCTCATAAATTCCTTTAGGCCCAGGAAACCGTTGCAACCAGGGCAGCTCCCCCCAACTCATATGACTTCATTGCCACAGTCACAATCTCAAGTTACTTCAGTACAGTCTCATGAAAATCAAATGATCTCTCAGATGCAGCCATCAAACTTACAAGGTTCTGCAGCAACTATACAGCAGAACAATGCTGCAAGCTTGCAGCATAATTCTATGTCTGGTTTGTCAACAACACAACAAAATATGTTGAATACAATTCAACCAAGTAATAATGCAGACGCTGGGCAAGGAAATTCTGCGAACTCTCTGCCACAGGTTCCCTTGAGCTCCCTTCAACAAAACAATGTTAGTACTCCTCAACAGACCAACATCAATTCATTATCATCACAAGGTGGGGTGAATGTGATCCAACCCAATCTAAATACCCATCAGTCAGGTTCCACTATGCTTCAGCCCCAACTGAAACATCAGGAACATCAGATGCTGCAGAATCAGCAGTACAAACAACAATATCAGCAGCAAGGACAATTGATGCAAAGGCAGCAGATCCTACCGCAGCGACAGCAGCTACACCAGCCAGGAAAGCAACAGCTGTCAGTACAGTCTCAGATTAACCAAATGAACGATATAAATGATATGAAAATGCGACAAGGAATAGGTGCTAAGCCAGGGGTATATCAGCAACATATTGCCTCAGGTCAAAACTCAGCCTATTCCCATCAACAGTCTAAACAAGGGAGTCCATTTCAGGTTTCTTCACCCCAACTCTTTCAGGCTGCGTCTCCTCAAATTCCACAACACTCATCTCCCCAAGTTGACCAACAAACTCAACAACAGTCTCTAGTAAAAGTTGTAACTCCTCTGCAATCTTCTAATTCACCTTTCGGAGTCCCTACTCCTTCACCTCCCATGGCTCCATCTCCTATGCTAGTAGATTCTGAGAAGTTCGTTCCTGGTGTTTCATCATCAAGTGCTGCCAACGTTGGACAACATATAGGGGGTGCAGCAGCACCAGCTCAATCCCTTGCCATTGGGACTCCGGGAATATCAGCCTCTCCTTTATTAGCAGAATTCAGTGGTCCAGATTGTGCATATTTTAATGCTTTCGCAGCTACTTCTGGCAAGTCAACTGCAGAGCAACCTATTGATCGTCTAATAAGAGCGGTGCAATCAATGTCAACTGAAACATTAACTGCTGCTGTCAATGATATCAGTTCAGTTGTCAGCATGAGTGATAGGATAGCAGGATCCGCTCCAGGTAATGGATCAAGAGCCGCTGTTGGCGAGGATTTGGTTTCCATGACTAATTGTCGTCTTCAGGCTAGAAATTTTATCACTCAAGATGGTACTAATGGAATCAGGAAGATAAAGCGCTATACCACTGCTAGACCGTTGAATATTAAGTCATCTGCTGTGAGCAAGAATGACAGTATAATGCAGTTATCTGCTTCAGAGGCTTCTCAGCAGGAGTCAACTGCAACAACCAATTTCAAGAAACCAAAGGCTGAGGCTACTCATGCCCTTTTGGAAGAAATACAGCAAATTAATCGCAGACTTATTGACACAGTAGTAGAAATAAGTGACAGAGATGTTGATCCAACTGCAGCTGCCATTGCTGCTGCTGAAGGGACAGAAGGGACCGTTGTCAAATGTTCTTTCATTCCTGTGGCTCTCAGCCCATCTTTAAAATCTCATTATGCTTCACTACAGTACCCTATTCAGCCTCTGCGCTTACTGGTTCCTTCAAATTATCCTAATTCTTCTCCCATATTCCTAGACAGGTTTTCAGTTGAATCACGTAACGGGAACGAAGATCTTTCAGAGAAAGCGAAATCAAAGTTTAGCATGTCCTTACGTAATTTTTCTCAACCAATGTCTCTGAAAGATATAGTGAAGACTTGGGATGTTTCTGCTCGTGGTGTTGTTTCTGAATATGCACAACAATTTGGTGGAGGAACATTCAGCTCAAAGTATGGATCATGGAAAGATATCTTGACCGCATAA 3912 0.4271 MDSNNWMPNQGSEPTLDSVDWRIQLHPESRQRIVNKIMDTLKKHLPVSGNEGLLELRKIAQRFEDKIYAAATSQSDYLRKISMKMLTMETKTQSTIASNMPSSEGGPSNNPPDQGLVLQSQVLNPGQQHPNPRQQLLPQTIQNHVAPQSNLPSVSALSQTPSQNISQNSNTQQPGQNSASNSIGQNSNIQGMFPGSQRQMQGRQQVVPPQQQQQQQPQNQQILYQQQQQVMKHKLSQMQQQQQQQNLLQPNQLNNSQQSVMQTSSAMQSSTMQSSLSSLPQNQQSNNVQQSAQSRLQQHSQIIRQQQQQNSIAQQQQNSIAQQQQTPMSQQSILPAQQQQQFGGPQSNVTNGQHAQMLGQQNNVGDTLKSQRLHPQQNNLMNPQQRQQQQLINQQNNLTNIHQQQSGNNVPGLQQQQFGTDSGNQGIQTSHHSAHMLQQPKVSMQQQLQHNGSKLLPSQSQQSQPQASQQQLISQVHNQPAQMQQQMGLQQQPNSLQRDMQQKLQASGSLHQQQNVLDQQKQLYQSQRALPETSTTSVDSTIQTAQPSGGDWQEELYQKLQTMKENYLPDLNEIFQKIAMRFQQYDSNPQQPKADQMDKLRQYRMMLERMITFLQIPKNLITPSIKEKLGAYEKQIVSLINSFRPRKPLQPGQLPPTHMTSLPQSQSQVTSVQSHENQMISQMQPSNLQGSAATIQQNNAASLQHNSMSGLSTTQQNMLNTIQPSNNADAGQGNSANSLPQVPLSSLQQNNVSTPQQTNINSLSSQGGVNVIQPNLNTHQSGSTMLQPQLKHQEHQMLQNQQYKQQYQQQGQLMQRQQILPQRQQLHQPGKQQLSVQSQINQMNDINDMKMRQGIGAKPGVYQQHIASGQNSAYSHQQSKQGSPFQVSSPQLFQAASPQIPQHSSPQVDQQTQQQSLVKVVTPLQSSNSPFGVPTPSPPMAPSPMLVDSEKFVPGVSSSSAANVGQHIGGAAAPAQSLAIGTPGISASPLLAEFSGPDCAYFNAFAATSGKSTAEQPIDRLIRAVQSMSTETLTAAVNDISSVVSMSDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFITQDGTNGIRKIKRYTTARPLNIKSSAVSKNDSIMQLSASEASQQESTATTNFKKPKAEATHALLEEIQQINRRLIDTVVEISDRDVDPTAAAIAAAEGTEGTVVKCSFIPVALSPSLKSHYASLQYPIQPLRLLVPSNYPNSSPIFLDRFSVESRNGNEDLSEKAKSKFSMSLRNFSQPMSLKDIVKTWDVSARGVVSEYAQQFGGGTFSSKYGSWKDILTA 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05620 1303 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 857 1293 IPR044661 GO:0003713|GO:0031490
Vifa2g05620 1303 Coils Coil 289 316 - -
Vifa2g05620 1303 MobiDBLite consensus disorder prediction 644 678 - -
Vifa2g05620 1303 Pfam KIX domain 19 98 IPR036546 -
Vifa2g05620 1303 MobiDBLite consensus disorder prediction 92 117 - -
Vifa2g05620 1303 FunFam Mediator of RNA polymerase II transcription subunit 15a 20 98 - -
Vifa2g05620 1303 MobiDBLite consensus disorder prediction 402 550 - -
Vifa2g05620 1303 MobiDBLite consensus disorder prediction 255 352 - -
Vifa2g05620 1303 Coils Coil 224 244 - -
Vifa2g05620 1303 MobiDBLite consensus disorder prediction 721 770 - -
Vifa2g05620 1303 MobiDBLite consensus disorder prediction 654 678 - -
Vifa2g05620 1303 MobiDBLite consensus disorder prediction 151 219 - -
Vifa2g05620 1303 MobiDBLite consensus disorder prediction 895 914 - -
Vifa2g05620 1303 SUPERFAMILY Kix domain of CBP (creb binding protein) 20 94 IPR036529 GO:0003712|GO:0006355
Vifa2g05620 1303 Gene3D Coactivator CBP, KIX domain 19 98 IPR036529 GO:0003712|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05620 Vifa-Chr2 1667249448 1667258034 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05620 K14972 - gmx:100805336 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05620 2 1667249448 1667258034 Vifa2g05620 2 1667249448 1667258034 PCT