Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05617 ATGTCATCTCTGAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAAGAAACTGTTCACAAGCTTGAGCAGGAGTCTGGATTTTTCTTTAACATGAAGTATTTTGAGGATGAAGTTCATGGTGGGAATTGGGATGAAGTTGAAAAGTACTTATCTGGTTTTACAAAAGTTGATGATAATAGGTATTCTATGAAGATTTTTTTTGAGATAAGGAAGCAAAAGTATCTTGAAGCTCTAGATAAGCATGATCGGTCGAAAGCTGTAGAGATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAATGAAGAGTTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAGAACGAACAGTTGTCGAAGTATGGTGATACTAAGTCTGCGCGAGCAATCATGTTGGTTGAGCTTAAGAAGCTCATTGAAGCTAATCCGTTATTTCGCGACAAATTGCAATTTCCTAATCTTAAGAACTCAAGGTTAAGGACACTCATCAATCAAAGCTTGAATTGGCAACATCAACTTTGTAAGAATCCTCGTCCGAATCCTGATATAAAAACTCTTTTTGTGGATCACTCATGCGGACAACCGAATGGTGCACGAGCTCCTTCGCCTGCTAACAGTCCGCTATTAGGATCCTTACCTGGTGCACGAGCTCCTTCGCCTGGTGGATTTCCTCCTCTTGGCGCTCATGGGCCTTTTCAACCTACTCCGGCACAAGTGCCAGCACAGCTCGCGGGTTGGATGTCAAATCCTACTACTGTAGCACACGCTGCAGTTTCGGCTGGAGGTGGTATCGGCGGAGGAGGTATCGGTCTTGGTGCTCCATCAATGCCCGGTGCTTTGAAGCATCCACGGACTCCTCCAACTAATCCGTCTGTCGACTATCCATCTGGTGGAGACTCAGACCATGTTACAAAGAGAACAAGGCCAATGGGAATAACAGATGAGGTTCTACCTGTCAATGTGTTGTCGGCGTCATTCCCTGGACATGGTCAAAGTCAGGCTTTTAATGCACCCGATGACTTGCCGTTGCCAAAGACTCTCATGCGAACTCTGAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTTCTAGTTGGTACAAATGTGGGGGACATCGCCTTATGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCGAGGAACTTCAAAGTTTGGGATCTTAGCGCATGTTCAATGGCATTTCAGGCTGCTCTTGTCAAAGATCCAAGCGTTTCTGTTAACCGTGTGATTTGGAGTCCTGACGGTGCTTTATTTGGAGTTGCATACTCAAGGCACATTGTTCAGATATACTCTTACCAAGGCGGTGATGAAGTTCGACAACACTTGGAGATTGATGCTCATGCTGGAGGAGTAAACGATCTAGCATTTTCCCACCCAAATAAGCAACTGTGTGTGATAACTTGCGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCATCGGGAACAAAGCAATATACATTCGAAGGACACGAGGCTCCGGTTTATTCTGTCTGTCCGCATTATAAAGAAAACATTCAGTTTATCTTTTCCACAGCGCTAGATGGAAAAATAAAAGCATGGCTGTATGACAATTTGGGATCCCGTGTTGATTATGATGCTCCTGGTCGATGGTGCACAACCATGGCTTATAGTGCTGACGGTACAAGGCTATTTTCATGTGGAACAAGTAAAGATGGAGATTCCTCTATTGTGGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTACCAAGGATTTCGCAAACGATCTTTGGGTGTTGTGCAATTCGATACAACCAAAAATCGTTTTTTGGCTGCCGGAGATGATTTCTCCATTAAATTCTGGGATATGGACAATATTCAGCTTTTGACAACTGCTGATGCTGAGGGGGGTCTTCCCGCAAGTCCACGTATTCGTTTCAACAAGGACGGAACTCTTTTAGCCGTCTCAACAAACGATAATGGAATCAAAATTATAGCCAATGCAGACGGCATTCGTTTGTTGCGTACATTAGAGAATTCTATGTATGATGCATCAAGAGCATCAGAATCCTTGGTAAAGCCTACGATAAATTCAATGTCTTCTGCTGCTGCCGCAACTAGTGCTGCATTGGCTGAGAGAGCCTCGTCTGTAGCAGCTATTGCTGGAATGAATGGAGATACTCGAAACATGGGCGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAATCAAAGATATGGAAGCTCACTGAAATCAATGAACCGTCTCATTGTAGATCATTGAAGCTACCAGAGAATGTTAGAGTAAACAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTAGCATTAGCATCAAATGCCATTCACCTTCTCTGGAAATGGCCGCGAAATGAACGTAACTCATCTGGCAAGGCCAATGCAACTGTGCAACCTCTGCTGTGGCAACCATCGAGCGGCATACTGATGACTAATGACATCGCGGATAGCAATCCTGAAGATTCCGTTCCTTGCTTTGCTCTGTCCAAAAATGATTCGTATGTAATGTCTGCGTCCGGAGGGAAAATATCTTTGTTTAACATGATGACTTTTAAGACAATGACAACTTTCATGGCTTCACCACCGGCAGCTACGTTTCTTGCTTTCCATCCTCAAGATAATAATATTATTGCTATAGGCATGGATGATTCCTCCATTCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGTCATACAAAAAGAATTACGGGTCTTGCGTTCTCTCATGTATTGAATGTTCTTGTATCATCTGGAGCGGATGCTCAGATTTGTGTGTGGAATACCGACGGATGGGAAAAACAGAAGACTAGATTCTTGCAGCTGCCTCCTGGTAGGACTCCATCAGCACAGTCAGATACGCGTGTGCAGTTTCATCAAGATCAGATACAGTTCTTGGTTGTACACGAAACTCAGCTAGCCATTTTCGAAGCAACTAAACTAGAATGTCTAAAGCAGTGGGCTCCAAGGGAATCTTCTGCACCAATATCACATGCAACATTTTCCTGCGACAGCCAGCTGATATATGCAAGCTTTTTAGACGCAACCGTCTGTGTATTTAATGCTTCAAATCTCAGATTACGGTGTCGTATCAATCCTTCTGCTTATCTTCCTGCAAGTGTCAGCAATTCAAATGTACAACCACTAGTAATCGCGGCACATCCACAAGAACCAAACCAGTTTGCGGTAGGACTATCTGACGGTGGAGTTCATGTGTTCGAGCCACTAGAATCGGAAGCGAAATGGGGCGTGCCACCTCCTCCGATCGAAAACGGATCAGCAAGCAATAACGTAGCAGTAGCTACTTCAGTTGGACTTTCTTCAGATCAAGCACAAAGATGA 3447 0.434 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHGGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPGARAPSPGGFPPLGAHGPFQPTPAQVPAQLAGWMSNPTTVAHAAVSAGGGIGGGGIGLGAPSMPGALKHPRTPPTNPSVDYPSGGDSDHVTKRTRPMGITDEVLPVNVLSASFPGHGQSQAFNAPDDLPLPKTLMRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMAFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYQGGDEVRQHLEIDAHAGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTADAEGGLPASPRIRFNKDGTLLAVSTNDNGIKIIANADGIRLLRTLENSMYDASRASESLVKPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRNMGDVKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANATVQPLLWQPSSGILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMASPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPRESSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPSAYLPASVSNSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEAKWGVPPPPIENGSASNNVAVATSVGLSSDQAQR 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05617 1148 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 645 IPR001680 GO:0005515
Vifa2g05617 1148 ProSiteProfiles Trp-Asp (WD) repeats profile. 469 512 IPR001680 GO:0005515
Vifa2g05617 1148 SMART ctlh 34 92 IPR006595 -
Vifa2g05617 1148 FunFam Topless-related protein 3 750 984 - -
Vifa2g05617 1148 SMART Lish 4 36 IPR006594 GO:0005515
Vifa2g05617 1148 MobiDBLite consensus disorder prediction 291 318 - -
Vifa2g05617 1148 CDD WD40 359 678 - -
Vifa2g05617 1148 Gene3D - 559 697 IPR015943 GO:0005515
Vifa2g05617 1148 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Vifa2g05617 1148 ProSiteProfiles Trp-Asp (WD) repeats profile. 931 972 IPR001680 GO:0005515
Vifa2g05617 1148 FunFam Topless-related protein 1 334 554 - -
Vifa2g05617 1148 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 931 963 - -
Vifa2g05617 1148 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1128 IPR027728 GO:0006355
Vifa2g05617 1148 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 469 507 - -
Vifa2g05617 1148 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vifa2g05617 1148 Gene3D - 814 1110 IPR015943 GO:0005515
Vifa2g05617 1148 SMART WD40_4 506 547 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 1015 1056 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 596 636 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 841 878 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 550 593 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 924 963 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 639 680 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 1069 1109 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 462 503 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 356 395 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 881 921 IPR001680 GO:0005515
Vifa2g05617 1148 SMART WD40_4 416 456 IPR001680 GO:0005515
Vifa2g05617 1148 ProSitePatterns Trp-Asp (WD) repeats signature. 490 504 IPR019775 -
Vifa2g05617 1148 Gene3D - 336 558 IPR015943 GO:0005515
Vifa2g05617 1148 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 358 582 IPR011047 -
Vifa2g05617 1148 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 949 1124 - -
Vifa2g05617 1148 MobiDBLite consensus disorder prediction 206 234 - -
Vifa2g05617 1148 Pfam WD domain, G-beta repeat 469 503 IPR001680 GO:0005515
Vifa2g05617 1148 Pfam WD domain, G-beta repeat 930 963 IPR001680 GO:0005515
Vifa2g05617 1148 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 513 968 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05617 Vifa-Chr2 1664893212 1664899498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05617 468 678 Miscellaneous Gene Families AT5G08390 22.275 3.73e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05617 - - gmx:100795759 2081.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05617 2 1664893212 1664899498 Vifa2g05617 2 1664893212 1664899498 ECH