Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05615 ATGGGTGGAGCGTGTTCTCGGAAGAAAGAGGGGGATAATGAAGATAATCTTAGTAGAGGATTTTCTAGGAAATATTGCAAATGTGGGAGTTTGAAATGGTGGACGTCATCCTTTTCTTATCCATACATGGATTTACGCGCACAAAAAGGAGAATGTCCATCACTGTTGGACTTGTGTGTCCAGAAAATAAGTGAGGATTTGGATAGACATAACTCATTTTCTATGCTGCCACGTGATATAAGTCAGCAAGTTTTAAATAATTTGGTCTACTCTCGACGTCTTACTGGTGGTTCTCTTGAAGCTTTTAGAGATTGTGCTCTCCAGGATCTGTACTTGGGAGAATATGCTGGTGTTGATGATTCTTGGATGGATGTCATTTCATCTCAGGGTTCATCTTTACTCTCGGTAGATCTTTCTGGATCTGATGTCACTGATTTTGGATTGACTTACCTTAAAGAATGTCAAAGTCTCATTTCCTTAAATCTAAATTACTGTGACCAAATTTCGGATCATGGACTGGATTATATCAGTGGTCTGTCGAACTTGACATGTTTGAGTTTTAGAAGAAATGATTCAATATCAGCTCAAGGAATGAGTGCCTTCTCTAGTCTTGTTAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGCATTGTCCATCTTCAAGGTTTAACTAAATTGGAATCTCTCAATATGAAGTGGTGTAATTGCATAACAGATTCCGATATGAAGCCTCTATCAGAACTTGCAAGCTTGACAAGTCTAGAGATTTCATGTAGTAAAGTCACTGATTTTGGCATCAGTTTTCTAAGAGGATTACAGAAGCTTGTCCTGTTAAATCTGGAAGGGTGCCGTGTATCATCTGCATGCTTGGATTCTCTTGCAGAGCTTCCTTCACTGTCAAACTTGAATCTTAATAGATGCAATATTTCTGACAGAGGGTGTGAAAAGTTTTCGAGACTGGAAATGTTGAAAGTATTAAACTTGGGATTTAATGACATAAGAGATACATGTTTAGCTCATTTGAAAGCATTGTCAAAGTTGGAGAGCTTGAACCTTGACTCATGTAAGATTGGTGATGAAGGATTGGTGAACTTGGCAGGTCATAAGCAATTGATCTGCTTGCAATTGTCAGATACAGAAGTTGGAAACAATGGCCTAGAGCATTTATCAGGGTTGTCTAATCTGGAGAAAATAAATTTGTCCTTCACTGCTCTAAGTGATAGCGGTTTAAGGAAATTGTGTGGACTCTCATCTCTTAAGTCGCTTAATTTGGATGCTTACCAAATTACAGATGCTGGACTGGCAACCCTTACAAGTTTGACTGGCCTCACCGACCTTGATTTGTTTGGCGCTCGGATCACAGATATTGGGACAAATTATTTGAAAGAATTCAAGAACCTAAGGTCCTTGGAAATATGCAGTGGTGGATTGACTGATGCTGGTGTGAAAAATATCAAAGAGCTTACGTCGCTAAAGTGCTTAAATTTATCACAAAACAGTCACCTTACTAACAAAACAGTGGAGTTAATTGCTGGGCTCACTGGATTGGTTTCTTTGAATCTTTCAAATTCTCGCATTACCTCTGCTGGGCTGCAGCATTTGAAAATGCTGAAAAACTTGAGATCGCTGACATTGGAGTCATGTAAGGTGACAGCAAATGATATAAAGAAAATTAAATCAATACACCTACCGAATTTGGTAAGCTTTCGGCCCGAGTAG 1734 0.3916 MGGACSRKKEGDNEDNLSRGFSRKYCKCGSLKWWTSSFSYPYMDLRAQKGECPSLLDLCVQKISEDLDRHNSFSMLPRDISQQVLNNLVYSRRLTGGSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLLSVDLSGSDVTDFGLTYLKECQSLISLNLNYCDQISDHGLDYISGLSNLTCLSFRRNDSISAQGMSAFSSLVNLVKLDLERCPGIHGGIVHLQGLTKLESLNMKWCNCITDSDMKPLSELASLTSLEISCSKVTDFGISFLRGLQKLVLLNLEGCRVSSACLDSLAELPSLSNLNLNRCNISDRGCEKFSRLEMLKVLNLGFNDIRDTCLAHLKALSKLESLNLDSCKIGDEGLVNLAGHKQLICLQLSDTEVGNNGLEHLSGLSNLEKINLSFTALSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDIGTNYLKEFKNLRSLEICSGGLTDAGVKNIKELTSLKCLNLSQNSHLTNKTVELIAGLTGLVSLNLSNSRITSAGLQHLKMLKNLRSLTLESCKVTANDIKKIKSIHLPNLVSFRPE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05615 577 SMART LRR_CC_2 349 373 IPR006553 -
Vifa2g05615 577 SMART LRR_CC_2 422 445 IPR006553 -
Vifa2g05615 577 SMART LRR_CC_2 301 325 IPR006553 -
Vifa2g05615 577 SMART LRR_CC_2 154 179 IPR006553 -
Vifa2g05615 577 SMART LRR_CC_2 493 518 IPR006553 -
Vifa2g05615 577 SMART LRR_CC_2 228 253 IPR006553 -
Vifa2g05615 577 SMART LRR_CC_2 397 421 IPR006553 -
Vifa2g05615 577 SMART LRR_CC_2 542 566 IPR006553 -
Vifa2g05615 577 SMART LRR_RI_2 397 423 - -
Vifa2g05615 577 SMART LRR_RI_2 518 544 - -
Vifa2g05615 577 SMART LRR_RI_2 301 330 - -
Vifa2g05615 577 SMART LRR_RI_2 349 383 - -
Vifa2g05615 577 Gene3D Ribonuclease Inhibitor 220 293 IPR032675 -
Vifa2g05615 577 Gene3D Ribonuclease Inhibitor 90 219 IPR032675 -
Vifa2g05615 577 Gene3D Ribonuclease Inhibitor 478 572 IPR032675 -
Vifa2g05615 577 Gene3D Ribonuclease Inhibitor 373 460 IPR032675 -
Vifa2g05615 577 SUPERFAMILY RNI-like 392 569 - -
Vifa2g05615 577 FunFam Leucine-rich repeat family protein 220 298 - -
Vifa2g05615 577 Gene3D Ribonuclease Inhibitor 299 372 IPR032675 -
Vifa2g05615 577 SUPERFAMILY RNI-like 127 438 - -
Vifa2g05615 577 Pfam Leucine Rich repeat 154 176 IPR001611 GO:0005515
Vifa2g05615 577 Pfam Leucine Rich repeat 180 202 IPR001611 GO:0005515
Vifa2g05615 577 Pfam Leucine Rich repeat 398 419 IPR001611 GO:0005515
Vifa2g05615 577 Pfam Leucine Rich repeat 350 371 IPR001611 GO:0005515
Vifa2g05615 577 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Vifa2g05615 577 Pfam Leucine Rich repeat 327 341 IPR001611 GO:0005515
Vifa2g05615 577 Pfam Leucine Rich repeat 302 323 IPR001611 GO:0005515
Vifa2g05615 577 PANTHER UNCHARACTERIZED 328 488 - -
Vifa2g05615 577 FunFam Predicted protein 118 219 - -
Vifa2g05615 577 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05615 Vifa-Chr2 1664443148 1664450931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05615 179 534 Receptor kinase-like Gene Family AT2G15080 24.862 2.69e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05615 - - gmx:100795219 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05615 2 1664443148 1664450931 Vifa2g05615 2 1664443148 1664450931 ECH