Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05606 ATGGCCCCAAAATCTGGGAAAGGGAAAACAAATAAAGCAAAGGCTGAGAAGAAGAAAAAGGAGGAGAAAGCAGTAGCACCTTCTCTTGTTGACATCATTGTGGTTACCCCATATGATTCACAAATTGTACTCAAGGGTATCTCAACTGATAAGATACTTGATGTGAGGAAGCTATTGGCTGTGAAGGTGGAGACATGCCATTTTACAAACTATTCTTTATCACATGAGGTTAAGGGTCAAAGATTAAGTGAAAAAGTTGAGGTTGTTACCCTAAAGCCATGTGTTCTAAGAATGGTTGAAGAGGATTACACCGAAGAGGTTCACGCAGTTACGCACGTGCGAAGGCTATTGGATATTATTGCTTGTACTTCGAAATTCGGAAAGCCCAAACGTAACTTACCAGGCCCAGATTTGAAGCCCAAGAAAAACGGAAAAGCCCAAAACAATAACAAGAGCAGTGTGAGTCCACCTGCTACACCGAATGGAGAAGCCCGGGTCGGGTTACCGACGGCGGAGGTGCCGGCGTCGCCGATCTCGGATAATGTCGGAATGGTGGCGATTCACCCGACGCCGAAGCTGTCGGATTTTTACGAGTTTTTTTCGTTTTCTCATCTCACTCCACCGATTTTACATTTGAAGAAATGTGAACCGAAGGATGAAGATGATCGACGCAAAGGAGGTTACTTTCAACTTCAGGTTAAAATCATCAATGGAAAAGTGATAGAAGTGGTTGCGTCAGAGAAAGGCTTTTATAGTGTTGGAAAACTGTCTCTGCAGAGTCACACATTGGTTGATCTTCTGCAACAGCTCAGCAGAGGTTTTGCTAACGTATATGGATCATTGATGAAAGCTTTTTCGGATCGCAATAAGTTTGGAAATCTTCCATACGGACTTCGATCAAATACATGGCTTGTCGCTCCATCTGTTGGCGAATCTCTTTTAAACTTTCCAGCTCTACCTGCTGAGGATGAAAACTGGGATGGTAACGGGGGTGGCCAAGGAAGAAATGGCGAATATGATCATCGACAATGGGCAGCAGATTTTGCAATATTGGCTTCTCTTCCTTCCCAAACCGAGGAAGAGAGGGTGATCAGAGATCGAAAAGCTTTTTTGCTTCATAATCTGTTTGTTGATACATCAGTATTTAGGGCTGTTGCAGCTATTGAGCATGTGATGGAGTCCAAGTCTAGTACGAATTCTTCTCCGGGTTCTGTTCGGCATCAAGATCATGTTGGAGATTTATCCATTGTAGTCAAACGCGGTGGAAATGGAAAGTTTGATTCTACACTGAATGAATCCAGTAAGCGTGATGACGAAATTCAGAAAAACTTAATCAAAGGGTTGTCTGCGGATGAAAGTGTCACTGTTAATGATACTTCTTCCTTGGCTGTTGTGGTTGTTCACCATTGTGGATATACAGCAACAGTAAAGGCTGTGGGTAATGCGAACTCTAGGAAGACTAAAGTTCAGGATATTGAAATAGATGATCTACCAGAAGGAGGAGCAAATGCTCTTAACATCAACAGTTTGAGGGCACTGCTTCACAAGTCAGGAGCTGAATCTTCTGAAGGGACTTTAACATCCTTGTCAAATTTTGATGACTTGGATGCTTCAAAAATTTTTGTTGGGAAGGTGGTTGAAGAATGCATTGAAAAGATAAAGGAAGAGCCAAGTGTTTCAAAAAGGTCGATTCGATGGGAACTTGGTTCTTCTTGGATGCAGCATCTGCAGAAACAGGAAACTTCAACAGATGTTGGTTCTAACAGCAAGGATGGCAATGATGTTGCGCAATCTGTGAAAGGTCTTGGAAAGCAATTTAAGTTATTGAAGAAGAGGGAAAAGAAACCAAGTGACTTAAATAGTGCAGATTCTAGTGAGCAAAATATCAATGAGCCAAATGATGCTGAATTAAGTAGTTCCAATGGGTTAGATAAACTGCTTTCTAAAGAAGTCTTGTTGCGTCTCAAAGAATCTGGATCTGGTCTTCATATGAAGTCAGTGGATGAGCTTATCAACCTGGCACACAAGTTTTATGATGAAGTTGCCTTGCCAAAGCTGGTTACAGATTTTGCATCACTTGAACTTTCTCCGGTGGATGGTCGGACTTTAACTGACTTCATGCATTTAAGGGGACTTAAGATGGGATCTTTGGGTGAAGTGGTTAAACTTTCAGAGAATCTTCCACATATACAATCCCTTTGTATTCACGAGATGATAACTCGAGCATTCAAGCATCTACTTAAAGCAGTTATTGCTTCTGTGGACAATGTAGCAGATTTACCATCAGTCATTGCATCAACACTGAATTTCTTACTTGGAGGGTGTCGAACTGAAGACGCAGACCAAACTTCTGGTGATGATCATCATCTAAAAATTCATTGGTTACGTATGTTCTTGTCCAAAAGATTTGGTTGGACATTAAAAGATGAATTTCAACATTTAAGGAAGTTATCTATTCTTAGAGGGCTCTGTCACAAGGTTGGATTAGAGTTGTTCCCTAGAGATTATGACATGGAATTGCCTAAGCCGTTTGGGAAGTTCGATATTATCAGCCTTGTTCCTGTTTGCAAGCATGTGGGATGCTCCTCAATAGATGGACGCAATTTATTGGAATCATCTAAAATCGCTCTTGATAAAGGAAAGCTTGAGGATGCTGTGAGCTATGGAACAAAGGCATTGGCAAAGATGATGACTGTTTGTGGTCCATATCATAGAAATACTGCAAGTGCATATAGTCTTCTCGCTGTGGTTCTCTACCACACAGGAGATTTTAACCAGGCCACCATTTATCAGCAGAAGGCATTAGATATAAATGAGAGAGAGCTCGGACTTGACCACCCTGACACAATGAAAAGCTATGGTGATCTTTCTGTTTTCTACTACCGTCTGCAACATATTGAGCTGGCTTTGAAGTACGTTAATCGCGCTCTATTTCTCCTTCATTTCACATGTGGTCTGTCTCATCCCAATACAGCAGCAACTTATATAAACGTAGCAATGATGGAAGAAGGCATGGGAAATGTTAATGTGGCACTTCGTTACCTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTGGGAGCAGATCATATTCAGACTGCTGCAAGCTACCATGCCATAGCCATAGCACTTTCATTGATGGAAGCATATTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAGCTTGGTGCAGAAGATCTTCGAACTCAGGACGCCGCCGCGTGGCTAGAATATTTTGAATCAAAAGCCATAGAACAACAAGAAGCAGCAAAAAATGGAACTCCAAAGACAGATACATCCATTGCAAGTAAAGGTCACCTTAGTGTGTCAGATCTCCTGGATTTTATTAGTCCTGACAGTGATTCAAAGGGAAATGATGCTCAAAGGAAACAAAGGCGTCCAAAGATACTTCCAATAATTGACAACAACTCTCAAGAACATGATGATGCTGCAATAGCGGATGATGGAATTTTTGTTGAGAATGCCAAAGAAGCTGCTCCAGTGGTGGAAGGCAACATAGAAGAAACAAGTACCACAAAGATTTCTGAAGAACCAAAAGAAATCGGTGATCTCAGCAGTCACAAGCCAGTGGTTACAAGTGAAGCTGTTTATGAGACATCATCTGATGAAGGTTGGCAAGAAGCCAATTCAAAAGGGCGGTCAGCTAACGGTGCTAACCGCAAGTCTGGTCGTAGACAAAGACCTCTTCTATCGAAGCTCACAGTTAACGGTCCTGATAACAATACTTACAAAGAAGCCAGTTACAGGAACGACTCTATTGCCGTGCACCAAAAAGCATCTCCAAAAGTAGCTTCTGCTGTGTTATCTCCATCCAGAAAATCAAAAACTCCAAAAGCTTTGCCGTCTAAAGTTGCATCTACTCCCACCTCTCTGAGTTCTTTGGCCTCAAAGTCTATATCATACAAAGAAGTTGCTGTAGCACCACCAGGTACTGTTTTAAAGCCACTGTTGGAAAAAACTGAGGCAGAAAAGGTAAGCGATGATAATGAAACCCCAAAAACTGAAGGTTCTATCGAAAATTCTATAGCTGATGACACAGTTTCGAAGGAAGATGAAAAAGAAGCGACTCATGAAGATGACTCGGAACAAGAAAATTCTGCATCAGAACTTGAAAAGGTTTCTCTTTCAAGTGATCAAGCAAAACCTACAGAAACAAATGGAAGTAAGCTTTCTGCTGCAGCCAAACCGTTCAGTCCAGGAACGTTGTCTGCTTCTCGCCATTTAAACCCTGTTCCTCTCGCAACCATATATGATGCAAATGGGAGTCAAGGCATTCTTGTGGAGCCCATTCTTCCTCCAGCTGCTGCCCGGGTCCCTTGCGGACCAAGATCACCATTGTATTACAGAACCAATTATACTTTTCGCATGAAACACGGTTCAGCGAAAATAAGGGAAATAAGTGGATCAGGCGGTCCAAGAATAATGAATCCACATGCTCCCGAGTTTGTTCCAAGACGTGCTTCTCAAACAGAAACAGGTGAAGTCAAGAATAATTCTTCAAAAAACAATCTTTCGGAATCTGAGAAGTCAGAGATAGCAAGACAGATATTGCTGAGTTTTCTAGTGAAATCTGTTCATCAAAATGCTGATACTGTGGACGAGCCTAAAGTTAGTGAAGGAAAACTTGAGAACGTTGAAAATTCTTCTGACGGAGTAGCTAAAGACAGTGCTGTTATAAAAATACTGTATGGTACTGAAGATAAGAATAAGACAGCGGTTAGTTCCAGTGATGACAGTGAAGCGTCAGACAAAATAGACGGTGAAGGATTTGTAGTTGTCACAAACAGGAGAAAAAACAGACAGAAAATCACAAATGGTGTCACAGAATTGTACAACCAACCATCAATTTGTGCTTCAGTTCGTTGA 4905 0.4153 MAPKSGKGKTNKAKAEKKKKEEKAVAPSLVDIIVVTPYDSQIVLKGISTDKILDVRKLLAVKVETCHFTNYSLSHEVKGQRLSEKVEVVTLKPCVLRMVEEDYTEEVHAVTHVRRLLDIIACTSKFGKPKRNLPGPDLKPKKNGKAQNNNKSSVSPPATPNGEARVGLPTAEVPASPISDNVGMVAIHPTPKLSDFYEFFSFSHLTPPILHLKKCEPKDEDDRRKGGYFQLQVKIINGKVIEVVASEKGFYSVGKLSLQSHTLVDLLQQLSRGFANVYGSLMKAFSDRNKFGNLPYGLRSNTWLVAPSVGESLLNFPALPAEDENWDGNGGGQGRNGEYDHRQWAADFAILASLPSQTEEERVIRDRKAFLLHNLFVDTSVFRAVAAIEHVMESKSSTNSSPGSVRHQDHVGDLSIVVKRGGNGKFDSTLNESSKRDDEIQKNLIKGLSADESVTVNDTSSLAVVVVHHCGYTATVKAVGNANSRKTKVQDIEIDDLPEGGANALNINSLRALLHKSGAESSEGTLTSLSNFDDLDASKIFVGKVVEECIEKIKEEPSVSKRSIRWELGSSWMQHLQKQETSTDVGSNSKDGNDVAQSVKGLGKQFKLLKKREKKPSDLNSADSSEQNINEPNDAELSSSNGLDKLLSKEVLLRLKESGSGLHMKSVDELINLAHKFYDEVALPKLVTDFASLELSPVDGRTLTDFMHLRGLKMGSLGEVVKLSENLPHIQSLCIHEMITRAFKHLLKAVIASVDNVADLPSVIASTLNFLLGGCRTEDADQTSGDDHHLKIHWLRMFLSKRFGWTLKDEFQHLRKLSILRGLCHKVGLELFPRDYDMELPKPFGKFDIISLVPVCKHVGCSSIDGRNLLESSKIALDKGKLEDAVSYGTKALAKMMTVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVNVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLKILQAKLGAEDLRTQDAAAWLEYFESKAIEQQEAAKNGTPKTDTSIASKGHLSVSDLLDFISPDSDSKGNDAQRKQRRPKILPIIDNNSQEHDDAAIADDGIFVENAKEAAPVVEGNIEETSTTKISEEPKEIGDLSSHKPVVTSEAVYETSSDEGWQEANSKGRSANGANRKSGRRQRPLLSKLTVNGPDNNTYKEASYRNDSIAVHQKASPKVASAVLSPSRKSKTPKALPSKVASTPTSLSSLASKSISYKEVAVAPPGTVLKPLLEKTEAEKVSDDNETPKTEGSIENSIADDTVSKEDEKEATHEDDSEQENSASELEKVSLSSDQAKPTETNGSKLSAAAKPFSPGTLSASRHLNPVPLATIYDANGSQGILVEPILPPAAARVPCGPRSPLYYRTNYTFRMKHGSAKIREISGSGGPRIMNPHAPEFVPRRASQTETGEVKNNSSKNNLSESEKSEIARQILLSFLVKSVHQNADTVDEPKVSEGKLENVENSSDGVAKDSAVIKILYGTEDKNKTAVSSSDDSEASDKIDGEGFVVVTNRRKNRQKITNGVTELYNQPSICASVR 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1124 1153 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g05606 1634 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 863 1113 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 610 640 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1246 1261 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1183 1197 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1174 1307 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 575 596 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1280 1307 - -
Vifa2g05606 1634 CDD CLU-central 697 838 IPR033646 -
Vifa2g05606 1634 Pfam Translation initiation factor eIF3 subunit 135 695 837 IPR033646 -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1357 1380 - -
Vifa2g05606 1634 ProSiteProfiles TPR repeat profile. 908 941 IPR019734 GO:0005515
Vifa2g05606 1634 SMART tpr_5 908 941 IPR019734 GO:0005515
Vifa2g05606 1634 SMART tpr_5 950 983 IPR019734 GO:0005515
Vifa2g05606 1634 SMART tpr_5 992 1025 IPR019734 GO:0005515
Vifa2g05606 1634 SUPERFAMILY TPR-like 945 1069 IPR011990 GO:0005515
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1333 1347 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 143 159 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1381 1405 - -
Vifa2g05606 1634 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 6 1389 IPR027523 GO:0006996
Vifa2g05606 1634 Gene3D Tetratricopeptide repeat domain 867 1115 IPR011990 GO:0005515
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1333 1407 - -
Vifa2g05606 1634 Pfam Tetratricopeptide repeat 907 977 - -
Vifa2g05606 1634 Pfam Tetratricopeptide repeat 991 1065 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1205 1234 - -
Vifa2g05606 1634 Pfam Mitochondrial function, CLU-N-term 49 120 IPR028275 -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1481 1521 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 1503 1521 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 130 168 - -
Vifa2g05606 1634 SUPERFAMILY TPR-like 874 977 IPR011990 GO:0005515
Vifa2g05606 1634 ProSiteProfiles Clueless (Clu) domain profile. 322 587 IPR025697 -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 621 640 - -
Vifa2g05606 1634 MobiDBLite consensus disorder prediction 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05606 Vifa-Chr2 1662019017 1662030712 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05606 K03255 - gmx:100801625 2320.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05606 2 1662019017 1662030712 Vifa2g05606 2 1662019017 1662030712 ECH