Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05592 ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTTGAAGAACTTCCTCCGTCTCCGCCGTTATCGAAGAGGCTTCGTTGTTCCTCTGCTACTTCTCCGATTCGTTTTCCGACTCCATCACTCTTCGAACAGCTTCGTAATCTCTTCCCTCACATGGAACAACAGGTTCTTGAGAGAGCTCTTCAAGAAAGTGACAATGATCTAGATGCTGCCATCAAGAGCCTGAATGAGCTTTACTTGGGGGCTGGGGGTGGGAATTTCGGAACTGCTGAAGAATCAGAGATTGATGTCAGTGGGGATCAAGGTAAATTGGAAGATAATGTGAATAATTCTGCTTCTGAGAATCAGTCTACTTTGAACAACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTTCGAGAAATGATGGTTGCCACCAGTGTTGATGATGCTAGAGCACGTGCTGCTAGAATGCTGGAGGTTCTAGAGAAATCAATCAGCGAACGAGCAAAGGCTGTGGCAACAGATTCTCTTCAGAAGGAAAATTTGATGCTGAAGCAGCAAATTGAAGTGCTGATTAAGGAGAAAAATTCTTTTAAAAATGCATTCAGGATTCAGCAAGAACGCCTTGCTGATTATGATAATAAGAATCAAGAATTGCAGCAGTTGAAGCAGTTGGCATCTCAATACCAGGAACAGATCAGAACTCTTGAGATGAATAACTATGCATTGGGAATGCATTTGAGGCAGGCTCAACAAAGCAATGGATTTCAAGGGAATTTCCCACCCGATGTCTTCTAA 789 0.4335 MSAAVCGSKRSFFEELPPSPPLSKRLRCSSATSPIRFPTPSLFEQLRNLFPHMEQQVLERALQESDNDLDAAIKSLNELYLGAGGGNFGTAEESEIDVSGDQGKLEDNVNNSASENQSTLNNLPADGAEWIDFFVREMMVATSVDDARARAARMLEVLEKSISERAKAVATDSLQKENLMLKQQIEVLIKEKNSFKNAFRIQQERLADYDNKNQELQQLKQLASQYQEQIRTLEMNNYALGMHLRQAQQSNGFQGNFPPDVF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05592 262 SUPERFAMILY UBA-like 40 83 IPR009060 GO:0005515
Vifa2g05592 262 CDD CUE 41 76 - -
Vifa2g05592 262 SMART cue_7 38 80 IPR003892 GO:0043130
Vifa2g05592 262 MobiDBLite consensus disorder prediction 92 121 - -
Vifa2g05592 262 MobiDBLite consensus disorder prediction 104 121 - -
Vifa2g05592 262 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 262 - -
Vifa2g05592 262 Gene3D - 40 85 - -
Vifa2g05592 262 Coils Coil 171 191 - -
Vifa2g05592 262 Coils Coil 262 262 - -
Vifa2g05592 262 Coils Coil 199 236 - -
Vifa2g05592 262 ProSiteProfiles CUE domain profile. 38 81 IPR003892 GO:0043130
Vifa2g05592 262 Pfam CUE domain 40 78 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05592 Vifa-Chr2 1659907845 1659911761 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05592 - - gmx:100813137 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05592 2 1659907845 1659911761 Vifa2g05592 2 1659907845 1659911761 ECH
Vifa2g05592 2 1659907845 1659911761 Vifa2g05592 2 1659907845 1659911761 PCT