Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05578 ATGGTTTTCTCTTCCTCATTTTCATTCTTTCTTTGGCTTCTCATTTTATCATCAACATTTTCTCTAGTTTTAGGGAACAAAGCATTTATAGGAACATATGGAGTAAATTATGGAAGAGTAGCGGATAATTTACCTCCCCCTGAAAGTGTGGTTACACTTCTCAAAGCAGCAAAAATAAGAAACGTAAGAGTCTATGATGTTAATCCTCAAGTCCTAAGTGCTTTCAAAGGATCTGGGATATGTCTAAGTGTTTGTCTTCCTAACGAACTCTTAACCGACATCGGTGTCGGCGAAGACCGCGCCATGAATTGGATCAAAGACAATGTCCAACCCTATCTTCCAGGCACAAAAATCTGTGGCATTGCCATAGGAAATGAAATTCTAGGAGGAGGAAGTGTTGAGCTTTGGGAAGCTTTACTTCCAGCAGCAAAAAACATTTATAGTGCACTTGATAGACTTGGTTTAGCACATCAAATCGAAGTTTCGAGTCCGCATTCAGAAGCTGTATTTGCAAATTCATATCCTCCATCTTCATGCACATTTAGGGATGATATAATACCTTACATGAAACCACTTTTACAATTTTTTTCACAAATTGGAACACCTTTTTATATAAATGCATACCCTTTTTTGGCATATAAAAATGACCCTTCACATATTGATATAAACTATGCTTTGATGAAGAAGAATCATGGAATTTATGATGCTAAGAGTAAACTACATTATGATAACATGCTTGATGCACAAATTGATGCTTCTTATTTTGCATTGGAGAAATTTGGGTTTGATAAAATGGAAGTTATTGTTAGTGAAACTGGTTGGGCTTCAAAGGGTGATGATAATGAAGCTGGAGCAAATGTGAAAAATGCAAGGACTTATAATAAGAATTTGAGAAAGAAGTTATTGAAGAGAAAAGGAACACCTCATAGGCCTAAAATGTTGGTTAGAGCTTATATATTTGCTTTGTTTAATGAGAATTTGAAACCTGGGCCAACATCAGAAAGAAATTTTGGATTGTTTAAACATGATGGAAGTATTGCTTATGATATTGGATTTACTGGGCTTGTTCCTTCCTCAGCAACATCATCTTTCCTATCCTTCAAGGATATTGGGTCTTCATATGTGATGGTTTCTTCAAGTTGTATGGCAATTCTTCTTCTTTTAGCATTGTAA 1173 0.3555 MVFSSSFSFFLWLLILSSTFSLVLGNKAFIGTYGVNYGRVADNLPPPESVVTLLKAAKIRNVRVYDVNPQVLSAFKGSGICLSVCLPNELLTDIGVGEDRAMNWIKDNVQPYLPGTKICGIAIGNEILGGGSVELWEALLPAAKNIYSALDRLGLAHQIEVSSPHSEAVFANSYPPSSCTFRDDIIPYMKPLLQFFSQIGTPFYINAYPFLAYKNDPSHIDINYALMKKNHGIYDAKSKLHYDNMLDAQIDASYFALEKFGFDKMEVIVSETGWASKGDDNEAGANVKNARTYNKNLRKKLLKRKGTPHRPKMLVRAYIFALFNENLKPGPTSERNFGLFKHDGSIAYDIGFTGLVPSSATSSFLSFKDIGSSYVMVSSSCMAILLLLAL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05578 390 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 21 355 IPR044965 GO:0004553|GO:0005975
Vifa2g05578 390 SUPERFAMILY (Trans)glycosidases 33 351 IPR017853 -
Vifa2g05578 390 Gene3D Glycosidases 32 355 - -
Vifa2g05578 390 FunFam Glucan endo-1,3-beta-glucosidase 14 31 357 - -
Vifa2g05578 390 Pfam Glycosyl hydrolases family 17 34 352 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05578 Vifa-Chr2 1656071291 1656074044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05578 28 361 Glycoside Hydrolase AT3G15800 74.925 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05578 - - tpra:123921541 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05578 2 1656071291 1656074044 Vifa2g05578 2 1656071291 1656074044 ECH
Vifa2g05578 2 1656071291 1656074044 Vifa2g05578 2 1656071291 1656074044 PCT