Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05577 ATGGAGAACGAAGCCAAAGATCAAGTCTCGTCGGTTCGGCTTTCAGCTCCTCCTTCTTGGAAGAAACTGTACTTCCCTAAGAAAGCAGGAACACCAAGAAAAGGCGAGATTGTGTTTGTTGCTCCAACTGGAGAAGAGATAACCTCCAAAAGACAATTGGAGCGGTACCTAAAATCACATCCTGAGAATCCTAACATATCAGAGTTTGATTGGGGAACCAGTGACACACCAAGGCGATCATCAAGGATTAGTGAGAAGGTCCAAACAACTCCAGAAGCACAGCCTCCGAAACGCGGTCGAAAATCAATTGGTTCAAAGGATGACAAGGTAACTGAAACTGAAGCTCATTCCAAGGAAGCCGAGCCTCCGAAGAAACGCGGTCGGAAATCAATTGGTTCAAAGAAGGATGATAAGGTAACTGAAACTGAAGCTGATTCAGAGGAAGCCGAGCCTCCGAAGAAACGCGGTCGAAAACCATCTGCTTCAAAGAAGGATGATAAGGTAACCGAAACTGAAGCTCATTCAGAGGAAGCCGAGCCTCTGAAGAAACGCGGTAAAAAACCATCTGCTTCAAAGAAGGATGATAAGGTAACCGAAACTGAAGCTCATTCAGAGGAAGCCGAGCCTCTGAAGAAACGCGGTAAAAAACCTTATGCTTCAAAGAAACATGGCAAGGAGACCAAAACTGAATCTCCTTCAGAGGAAGCCAAGGAAAAGGAGGAGTCTTCTGCGGAAGAACCGAAAGGCGATCCAGTTGATGCTGATAACATCATCGATGATAAAATAAAGAGTGATGATGCAGAGGTAATTAAGCAAAGTAATGCAGGTGAACTTTTTCAAGAAGCTTTGAATGCTGTGGTCGAGGAGACAGTTGAATCGACAAAGGAAAAGTCTTCTGTGGAAGAAGTGAAAGCTGATCCAATGGATACTGATGACAATGTCAATGATAAAACAAGGAGTGATGATGTGGATGGAATTAAGCAAAGTAACACAGAAGGTGAGCTTGTTCAAGAAGCTTCAGATGCTGTGGTTGAGGAGGCAATAGTAGAATCGGAAAAGGAAAAGTCTTCTGCAGAAGAACTGAATGCCGATCCAATGGATGCTGATAGCAATATCGATGATAAAACAAAGAGTAATGATGCAGAGGAAATTAAGCAAAGTAATACAGAAGGTGAACTTGTTCAAGAAGCTGTGGTTGAGGAGGCAATAGTAGAATCGGAAAAGGAAAAGTCTTCTGCAGAAGAACTGAATGCCGATCCAATGGATGCTGATAGCAATATCGATGATAAAACAAAGAGTAATGATGCAGAGGAAATTAAGCAAAGTAATACAGAAGGTGAACTTGTTCAAGAAGCTTCAAATGCTGTGGTTGAGGAGGCAATAGTTGAATCGGAAAAGGAAAAGTCTTATGCAGAAGAACTGAATGCCGATCCAATGGATGCTGATAGCAATATCGAAGATAAAACAAAGAGTAATGATGCAGAGGAAATTAAGCAAAGTAATACAGAAGGTGAACTTGTTCAAGAAGCTTCAAATGCTGTGGTTGAGGAGGCAATAGTTGAATCGGGCAAGGAAAATCCTTCTGTGGAAGAACCGAATGCCGATCCAATCGATACAGATAGCAACGTTGATGATAAAACGAAGAGTAATGATGCAGAGGTAATTAAGCAAAGTAACACAGAAGGTGAACTTGTTCCAGAAGCTTCAAATGCTGTGGTCGAAGAAGCAATAGTTGAATCAGAAAAGGAAAATCCTTCTGCAGAAAAACTGAATGCAGATCCAATGGATGCAGATAACAACTTCGATGATAAAACAAAGAGTAGTGATGCAGAGGAAATTAAGCAAAGTAATACAGTAGGTGAACTTGTTCAAGAAGCTACGAATGCTGTGATCGAGGAGGCAATAGTTGAATCGGAAAAGGAAGTGTCTTCTGCAGAAGAACCAAAAGTCGTCGGTTCAGTTGATGCTGATAACATAATCATTGATAACTTAAAGAGTGATAATGCAGAGGAAATTAAGCAAAGTAATGTGGAAGTGGAAGCTGAAAATTTGGCTGTTGAGAACCCTCAAGCGGAAGAAACACCAATGGCAGAACCAGAGGAACAACTTGTTGAAGAAGCTTCAGAGGCCATGGTGGTTACTGAAGAACCTCAAGAGGAGGCCCCAGTTGAATTGGAAAATGAAAACGGTTCAATTGACAGTAGTAAGCAGGAAAAATTAGGTGCTGAGGAAACCGAAGGAGCTGAGAATGCGAGTCTCAACGTTGAAGAAATTAATGACACGGATGAAATTCCAGCAAGTGATGAGAAACAAACAATTCAAGACGAGGAAACATTAGGTGCTGAGGAAACCGAAGGAGCTGAGAAAGTGAGTCTCAATGTTGAAGAAACTAATGGCAAGAATGAAATTCCAGCGGCAAGTGATGAGAAACAAACAATTCAAGGTGAGGAGCAAGTGAAGATGGTTGGCAATGAAAGTGTTATTTGGAGCAGTGCTCAATGA 2502 0.4177 MENEAKDQVSSVRLSAPPSWKKLYFPKKAGTPRKGEIVFVAPTGEEITSKRQLERYLKSHPENPNISEFDWGTSDTPRRSSRISEKVQTTPEAQPPKRGRKSIGSKDDKVTETEAHSKEAEPPKKRGRKSIGSKKDDKVTETEADSEEAEPPKKRGRKPSASKKDDKVTETEAHSEEAEPLKKRGKKPSASKKDDKVTETEAHSEEAEPLKKRGKKPYASKKHGKETKTESPSEEAKEKEESSAEEPKGDPVDADNIIDDKIKSDDAEVIKQSNAGELFQEALNAVVEETVESTKEKSSVEEVKADPMDTDDNVNDKTRSDDVDGIKQSNTEGELVQEASDAVVEEAIVESEKEKSSAEELNADPMDADSNIDDKTKSNDAEEIKQSNTEGELVQEAVVEEAIVESEKEKSSAEELNADPMDADSNIDDKTKSNDAEEIKQSNTEGELVQEASNAVVEEAIVESEKEKSYAEELNADPMDADSNIEDKTKSNDAEEIKQSNTEGELVQEASNAVVEEAIVESGKENPSVEEPNADPIDTDSNVDDKTKSNDAEVIKQSNTEGELVPEASNAVVEEAIVESEKENPSAEKLNADPMDADNNFDDKTKSSDAEEIKQSNTVGELVQEATNAVIEEAIVESEKEVSSAEEPKVVGSVDADNIIIDNLKSDNAEEIKQSNVEVEAENLAVENPQAEETPMAEPEEQLVEEASEAMVVTEEPQEEAPVELENENGSIDSSKQEKLGAEETEGAENASLNVEEINDTDEIPASDEKQTIQDEETLGAEETEGAEKVSLNVEETNGKNEIPAASDEKQTIQGEEQVKMVGNESVIWSSAQ 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05577 833 MobiDBLite consensus disorder prediction 680 819 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 346 389 - -
Vifa2g05577 833 Coils Coil 399 419 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 223 265 - -
Vifa2g05577 833 Pfam Methyl-CpG binding domain 10 73 IPR001739 GO:0003677
Vifa2g05577 833 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 6 76 IPR001739 GO:0003677
Vifa2g05577 833 MobiDBLite consensus disorder prediction 289 618 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 54 265 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 794 812 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 731 745 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 576 611 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 1 33 - -
Vifa2g05577 833 CDD MeCP2_MBD 16 80 - -
Vifa2g05577 833 PANTHER METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 3 119 IPR039622 -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 99 214 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 460 502 - -
Vifa2g05577 833 Coils Coil 344 364 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 401 444 - -
Vifa2g05577 833 SUPERFAMILY DNA-binding domain 7 97 IPR016177 GO:0003677
Vifa2g05577 833 MobiDBLite consensus disorder prediction 290 328 - -
Vifa2g05577 833 Gene3D - 10 80 - -
Vifa2g05577 833 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05577 Vifa-Chr2 1656065749 1656070188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05577 - - psat:127106715 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05577 2 1656065749 1656070188 Vifa2g05577 2 1656065749 1656070188 ECH