Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05553 ATGGTCGTTTTCTCTGTAAAACCCTTATTCACCATCTTTGTCGTTTCACTCACTCTCCTTGTCGTTTTCACATTGCTCTCGCCTCGTTACCCCTTTTCCCAAAATTGGATTTCTGGAGAACCCTCACTAGGGGAAGTAGATATATGGAGTGTTCGGAGACTCATGGAATGGAGACCTTGCAAATGGTGGCTACAAGGACATCAAACAGCTCTACCATTGGAAACCAATGGATATATCAGAGTGGATTGCTACGGAGGCCTCAACCAGATGCGAAGAGATTTCTGTGACGGTGTGGGAATTGCTCGGCTGTTAAACGCAACGCTTGTCCTGCCAAAGTTTGAAGTGGCTTCATATTGGAATGAAACAAGTGGTTTCGCGGATGTATACGATCTAGACTACTTCATTCAACAAATGAACGGCTTTGTCAAAGTCGTCAAAACGTTACCACCGGATATTGCAACAAAAGAACCAGTTCAAGTGGACTGTAGCAAAAGGAAAGGCCAATTCGACTATGTTGAAAGCGTTCTCCCATCTCTATTAAAACACAAATACATTTCAATCACACCAGCAATGTCCCAAAGAAGGGACAGATATCCTTTGTATGCAAAAGCTGCACTGTGTCAAGCTTGTTACAAGGCGTTACGTCTCGCCAAACCCTTGGAAATGAAAGCCTCTAAGCTCCTAGACGCAATACCTAAACCCTTCTTGTCACTCCATCTTCGTTTTGAGCCCGACATGGTTGCGTATAGCCAGTGCCAATACCCCGGTCTTTCACCTTCTTCCATCAAAGCCGTAGAAGCAGCAGTAGCATTGGTCGAGAGAAAACCATGGACAGGAGAATTAGCCCGTGTTTGGAGACAACGTGGGAAATGTCCCCTCACACCTAACGAGACAGCTTTAATACTTCAATCTCTTTCTATTCCGTCAACAACGAATATATACCTGGCAGCCGGAGACGGTCTGATGGAAATCGAAGGGTTAACCAATATTTACACCAACATATTCACCAAGTCTAGCCTTCTGAATGAAGAAGACTTCACAAGCATGCATGGCAATACAAAAGCTGCTTTGGATTATCATATATCTATAAATAGTGATTCATATATAGCTACATATTTTGGCAACATGGACAAGATGGTTGCAGCAATGAGAGCTTTCAAAGGGTTATACAAAACACTGTTTTTGAGTAGAAGAGGATTCGCGGAATTAACCTCACAAGGTCTGAGGGAAAAAGAGTTGATGCAAGCTCTATGGAAGGTTCACAGGGTCGAGTTCGTCGCGGGAAGAGGCTCTGCTCTTCCTGAGTGCTTTTGTGAATTCAAGTTATGA 1329 0.4372 MVVFSVKPLFTIFVVSLTLLVVFTLLSPRYPFSQNWISGEPSLGEVDIWSVRRLMEWRPCKWWLQGHQTALPLETNGYIRVDCYGGLNQMRRDFCDGVGIARLLNATLVLPKFEVASYWNETSGFADVYDLDYFIQQMNGFVKVVKTLPPDIATKEPVQVDCSKRKGQFDYVESVLPSLLKHKYISITPAMSQRRDRYPLYAKAALCQACYKALRLAKPLEMKASKLLDAIPKPFLSLHLRFEPDMVAYSQCQYPGLSPSSIKAVEAAVALVERKPWTGELARVWRQRGKCPLTPNETALILQSLSIPSTTNIYLAAGDGLMEIEGLTNIYTNIFTKSSLLNEEDFTSMHGNTKAALDYHISINSDSYIATYFGNMDKMVAAMRAFKGLYKTLFLSRRGFAELTSQGLREKELMQALWKVHRVEFVAGRGSALPECFCEFKL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05553 442 CDD O-FucT_plant 78 392 IPR024709 -
Vifa2g05553 442 PIRSF UCP009360 3 441 IPR024709 -
Vifa2g05553 442 Pfam GDP-fucose protein O-fucosyltransferase 78 386 IPR019378 -
Vifa2g05553 442 PANTHER OS02G0726500 PROTEIN-RELATED 12 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05553 Vifa-Chr2 1648369000 1648371769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05553 47 403 Miscellaneous Gene Families AT5G01100 33.152 8.05e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05553 - - gmx:100801207 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05553 2 1648369000 1648371769 Vifa2g05553 2 1648369000 1648371769 ECH