Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05547 ATGAAGGGCATGGAAGCCTTACACTTACGGTGCATGCTTCCACTATCCATCACCAAAAAAACTCTCTTTACGCACCAAACACCAACCCCATTATCATCAATTTCAAACCCACAATTCAGTTTAACCTTATCATCTTCTCAAACCGCTACTGTCAGAACAAGAGCTGGTTGGTTTTTGGGTCTCACAAAGGACAACAACAACAAGAAGATGAATTTGCCTGATACTGTTAAAGCTGGTGACCCTGTTCTTCATGAGCCAGCTCAAGAAGTTGATCCTAGTGAGATTAAGTCTGAGAAAGTGCAGAAGATTATTGATGATATGATTAGGGTCATGAGGAAAGCTCCTGGTGTTGGATTAGCTGCTCCTCAGATTGGAGTTGCTTCTAGGATAATTGTTTTGGAAGATACTAAAGAATATATTAGTTATGCACCAAAGGAAGAGACCAAAGCTCAAGATAGAAGACCTTTTGATCTTTTGGTGATCCTGAACCCCAAGCTGAAGAATAAGAGCAACAAGACTGCCCTATTTTTTGAAGGGTGTTTGAGTGTTGATGGATTTAGAGCTGTGGTGGAGCGTTACCTTGACGTTGAAGTTACAGGTTTGGATCGTAATGGCGAACCAATCAAAATAACTGCTTCTGGTTGGCAGGCCCGGGTTTTACAACATGAATGTGATCACTTGGAAGGAACTCTATATGTCGATAAGATGGTACCTAGAACTTTCAGAACCGTGGAAAACTTGGATCTTCCTCTTGCTCAAGGGTGCCCGAAACTTGGCCCTTGGTAA 786 0.4211 MKGMEALHLRCMLPLSITKKTLFTHQTPTPLSSISNPQFSLTLSSSQTATVRTRAGWFLGLTKDNNNKKMNLPDTVKAGDPVLHEPAQEVDPSEIKSEKVQKIIDDMIRVMRKAPGVGLAAPQIGVASRIIVLEDTKEYISYAPKEETKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGFRAVVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLEGTLYVDKMVPRTFRTVENLDLPLAQGCPKLGPW 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05547 261 PANTHER PEPTIDE DEFORMYLASE 67 255 IPR023635 GO:0042586
Vifa2g05547 261 NCBIfam peptide deformylase 76 239 IPR023635 GO:0042586
Vifa2g05547 261 PRINTS Peptide deformylase signature 105 134 IPR023635 GO:0042586
Vifa2g05547 261 PRINTS Peptide deformylase signature 178 189 IPR023635 GO:0042586
Vifa2g05547 261 PRINTS Peptide deformylase signature 190 208 IPR023635 GO:0042586
Vifa2g05547 261 PRINTS Peptide deformylase signature 209 238 IPR023635 GO:0042586
Vifa2g05547 261 Pfam Polypeptide deformylase 76 239 IPR023635 GO:0042586
Vifa2g05547 261 CDD Pep_deformylase 76 232 IPR023635 GO:0042586
Vifa2g05547 261 FunFam Peptide deformylase 72 255 - -
Vifa2g05547 261 SUPERFAMILY Peptide deformylase 68 244 IPR036821 -
Vifa2g05547 261 Gene3D Peptide deformylase 70 259 IPR036821 -
Vifa2g05547 261 Hamap Peptide deformylase [def]. 71 247 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05547 Vifa-Chr2 1646062132 1646064339 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05547 K01462 - gmx:100784292 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05547 2 1646062132 1646064339 Vifa2g05547 2 1646062132 1646064339 ECH
Vifa2g05547 2 1646062132 1646064339 Vifa2g05547 2 1646062132 1646064339 PCT