Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05536 ATGGTAAAGGACAAGTTAAAGGAACCTGTTCTTACAGCTTTCACAACTAATGGTGACTATGTCGCCATTTTGTCTGGAAATGGGACGGCCAAAATTTGGAATACAAACAGTGGGGATTTGTTAGCAGAGTGGAAGCCATCAGATGGAGATGAAGATATCCGTTACTCTTGTATTGCATGCAGTTTCACTGGGAAAAAGCGTAGAAAAGACCAGGGAACTTGCATATTAGCTCTTGGCACAGATGATGGAAAAGTTCTCGCTGTTGATGTTTCCACTGGTGACAAGAAGTGGCCTACTAGTCATCCAATTCCCGGTGGGATTTGCGGTCTTTCATTTGCTAAAAAAGGACAGCTTCTTTGTGTTGTTGGATATGATGGGAAGGCATATGAGATTAATTCTGAAACAGGAGAGCTTCTAAAGGAGTTCAGAGTCTCAAAAAAGTCCATCTCTTCACTGGCTTTTTCACATGATGAAAAATACTTGGCAATTTTCAGCTCTAGACTACGAGTTATAAGCCGGGAAACTGGGAAAGAGGTTTTGAAGTGCCCTAGTGATTTGGAAAATATAAACCGTGTATCTATATCCAATGATGCAAAATATTTAATTACATCAGATTCTGAGGTTAAACATCTTCAAGTTTGGAGGTGTGACTTAAGTTCAGGAACTGTGAGTACTGGTCCAACACTTTCAGCAAGGCATGCTCCATTGGTTCTTGATTGCCACCTCGGTGGCAATGAAGAAGATGATTTAGTTGTCTCGGCAATTACTTCAGAAAAAGTTGAAAGTGAAAAGGAAAATAGCGAAAGTTCAAAGAAAAAGCGCACTCCTATAATTGCATCCAGATTTCAATCCACGGGGGAAGATGGTCAGATGAAAGCTTTGGTGACTTATGGCTCTGCAGATCATCCAAAATTTACCGTCTTAAATATTAGCGATTTAGAGGAGAATGTGGTATTAAATGTGGGAGATGAGCCTGATTCCATTCAGAAGTATGACAGTCCTTCTAAGAAAGCAGTAGAAAAGGAAAGCAAGAAATCTAAGAAAAGACAAGCAACATCTGATCCTGATCTTCCAACCACAACTGACAAGGTGGATTTCGATATACGTGAGGATGCCGAAGGAGTCATTGATGATGATGATCCGAGTGAGCCAACAATGGGAGAGAAACTTGCTAGTCTCAATTTGGTGGATGAAAACAAATCCAATGGTGACAAAGAGCAAGAATCTTTGGTCTCATTGAAGCCTCCAAGTGCAGACAGTGTAGATGTTTTGCTTAAGCAAGCATTAAATGCTGATGATCGTGCCCTTCTACTGGATTGCTTGTATACACAAGATGAGAAGGTTATTTTTAAGTCAGTTGCGCAGTTGAACCCATCCAATGTTCTCAAACTTCTTAATTCTCTTATAACCATTATTGAGTCTAGGGGTGCAATTTTAGCGTGTGCTCTTCCATGGCTGAAGTGTCTACTTCTACAGCATGCAAGTGGAATAATGTCCCAAGAATCTTCATTAAAAGTTTTGAACTCTTTGTTTCAACTGATTGAGTCTAGAGTCTCCTCTTTTAATTCTGTCTTCCAACTCTCAAGTTTATTAGACGTCCTTTATGCCGGGGTTCTTGACGAGGAGGTAGATGAAGTTGAAACAGTGCCGATTATCTACGTGGACACAGACGACAGTGAAGGTGAAGAATCCGAGGATGTCATGGAAACTGACAAAGATAGCAAGGATGGAGGACTATCTGATGAAGCATTTGATGAACTTGGTGACATTGAAGGTAGTGCTGATGGTATGATGGAAGATTAA 1803 0.4054 MVKDKLKEPVLTAFTTNGDYVAILSGNGTAKIWNTNSGDLLAEWKPSDGDEDIRYSCIACSFTGKKRRKDQGTCILALGTDDGKVLAVDVSTGDKKWPTSHPIPGGICGLSFAKKGQLLCVVGYDGKAYEINSETGELLKEFRVSKKSISSLAFSHDEKYLAIFSSRLRVISRETGKEVLKCPSDLENINRVSISNDAKYLITSDSEVKHLQVWRCDLSSGTVSTGPTLSARHAPLVLDCHLGGNEEDDLVVSAITSEKVESEKENSESSKKKRTPIIASRFQSTGEDGQMKALVTYGSADHPKFTVLNISDLEENVVLNVGDEPDSIQKYDSPSKKAVEKESKKSKKRQATSDPDLPTTTDKVDFDIREDAEGVIDDDDPSEPTMGEKLASLNLVDENKSNGDKEQESLVSLKPPSADSVDVLLKQALNADDRALLLDCLYTQDEKVIFKSVAQLNPSNVLKLLNSLITIIESRGAILACALPWLKCLLLQHASGIMSQESSLKVLNSLFQLIESRVSSFNSVFQLSSLLDVLYAGVLDEEVDEVETVPIIYVDTDDSEGEESEDVMETDKDSKDGGLSDEAFDELGDIEGSADGMMED 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05536 600 Pfam Anaphase-promoting complex subunit 4 WD40 domain 75 155 IPR024977 -
Vifa2g05536 600 MobiDBLite consensus disorder prediction 324 368 - -
Vifa2g05536 600 MobiDBLite consensus disorder prediction 568 582 - -
Vifa2g05536 600 MobiDBLite consensus disorder prediction 260 275 - -
Vifa2g05536 600 PANTHER OS03G0300300 PROTEIN 6 576 - -
Vifa2g05536 600 Gene3D - 11 353 IPR015943 GO:0005515
Vifa2g05536 600 MobiDBLite consensus disorder prediction 555 600 - -
Vifa2g05536 600 MobiDBLite consensus disorder prediction 583 600 - -
Vifa2g05536 600 MobiDBLite consensus disorder prediction 260 279 - -
Vifa2g05536 600 SUPERFAMILY WD40 repeat-like 13 224 IPR036322 GO:0005515
Vifa2g05536 600 Pfam Dip2/Utp12 Family 433 534 IPR007148 -
Vifa2g05536 600 MobiDBLite consensus disorder prediction 329 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05536 Vifa-Chr2 1643830088 1643834334 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05536 K14546 - gmx:100796828 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05536 2 1643830088 1643834334 Vifa2g05536 2 1643830088 1643834334 ECH