Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05524 ATGCGATTAACTTCTTCAATGGGATTCGGGTCGGGTTCTCTAATGTGGTTCCGTAAGGGTATTCGGATCCACGATAACCCGGCACTCGAATACGCTTCCAGAGGATCATCTTCATCTTCTAGTCTTTATCCTCTTTTCATTATCGACCCGCATTACATGAAACCCGACCCGAATGCTTTCTCACCCGGTTCTTCTCTGGCGGGTCTCAACCGTATCAATTTCTTGCTGCAAAGCCTTGGTGATCTTGATGTTAACCTTAAGAAGCTTGGTTCGAGACTGTTGATACTGAAGGGTGATCCTCATGAGGTTCTCATTCGATGCTTGAAAGAGTGGAACATTGGAAAATTATGCTTTGAGTATGACACTGATCCATACTATCAAGCTCTAGATATTAAAATCAAGGACTATGCTCTTAAGGCAGGGATTGAGGTTTTCTCTCCTGTAAGCCACACACTTTTCAATCCAACTGATATTATACAGAAGAATGGAGGGAAGCCGCCGCTTAGTTATCAATCGTTTGTCAAGCTTGCGGGGGAGCCGCCATCTCCACTCTCAACCAAGTATTCTTTACTTCCTCCGGTTGGCCATCTTGGAAGTTGTGATATTTCTGAAGTTCCAACCGTCAAAGATCTTGGATATGAAGATGCTAATTTGGAGGAGTTCTCTCCTTTCGTAGGAGGTGAATCGGAAGCTTTGAAGAGATTGGAAGAGTGCATGAAAGACAAGAAGTGGGTGGCAAATTTTGAGAAACCTAAGGGTAATCCATCTGCATTTCTTAAACCAGCAACAACTATTTTATCACCTTACTTGAAATTTGGTTGTCTCTCTTCTAGGTATTTCTACCAATGCATTCAAGATGTATATAAAAGTTCGCCAAAACACACGTCACCGCCTGTTTCTCTTCTAGGACAGTTGTTGTGGCGAGAGTTCTTTTACACAGCAGCTTTCGGGACTCCAAATTTCGATAGGATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGAAAAACTTCTGGAGGCTTGGAGAGATGCTAAGACAGGGTTTCCATGGATTGATGCTATCATGGTCCAGTTACACCAATGGGGTTGGATGCATCATTTGGCACGACATTCTGTTGCTTGTTTTCTAACTCGAGGCGATCTGTTTGTTCATTGGGAAAAAGGACGTGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCCATTAACAATGGAAACTGGATGTGGCTCTCATGTTCGTCTTTCTTCTATCAGTATAATCGTATTTATTCCCCAACCACATTTGGTAAGAAGTATGACCCTAATGGTGACTTTATTAGGCATTTTCTCCCAGTCTTAAGAGATATGCCCAAGGCGTACATCTATGAACCATGGACTGCTCCTCCAAGCATCCAGACCAAAGCAAATTGCATAATTGGAAAAGACTACCCAATGCCAGTTGTTTCTCACGACTCTGCAAGTAAAGAGTGCAAAAGGAAAATGGGCGAGACATATGCATTGAACAAAACACTTAATGGTTTGGTTGGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTGGATGAGGGCGAAGAACAAGAAACAAAAGCTAAAAAAAGATCTAGACAACTGCTAATTGGCTGA 1638 0.4237 MRLTSSMGFGSGSLMWFRKGIRIHDNPALEYASRGSSSSSSLYPLFIIDPHYMKPDPNAFSPGSSLAGLNRINFLLQSLGDLDVNLKKLGSRLLILKGDPHEVLIRCLKEWNIGKLCFEYDTDPYYQALDIKIKDYALKAGIEVFSPVSHTLFNPTDIIQKNGGKPPLSYQSFVKLAGEPPSPLSTKYSLLPPVGHLGSCDISEVPTVKDLGYEDANLEEFSPFVGGESEALKRLEECMKDKKWVANFEKPKGNPSAFLKPATTILSPYLKFGCLSSRYFYQCIQDVYKSSPKHTSPPVSLLGQLLWREFFYTAAFGTPNFDRMKGNRICKQIPWKDDEKLLEAWRDAKTGFPWIDAIMVQLHQWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDFIRHFLPVLRDMPKAYIYEPWTAPPSIQTKANCIIGKDYPMPVVSHDSASKECKRKMGETYALNKTLNGLVGEDDLKNLRRKLDEGEEQETKAKKRSRQLLIG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05524 545 PANTHER CRYPTOCHROME 13 506 IPR002081 -
Vifa2g05524 545 MobiDBLite consensus disorder prediction 526 545 - -
Vifa2g05524 545 Gene3D - 150 312 - -
Vifa2g05524 545 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 13 195 IPR036155 -
Vifa2g05524 545 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 319 543 - -
Vifa2g05524 545 Pfam DNA photolyase 13 176 IPR006050 -
Vifa2g05524 545 Pfam FAD binding domain of DNA photolyase 303 499 IPR005101 -
Vifa2g05524 545 Coils Coil 518 538 - -
Vifa2g05524 545 Gene3D HUPs 14 226 IPR014729 -
Vifa2g05524 545 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 213 504 IPR036134 -
Vifa2g05524 545 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 11 152 IPR006050 -
Vifa2g05524 545 FunFam Cryptochrome-1 319 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05524 Vifa-Chr2 1642366050 1642370181 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05524 K02295 - gmx:100780347 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05524 2 1642366050 1642370181 Vifa2g05524 2 1642366050 1642370181 ECH