Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05508 ATGTCAAAGACAGATAGTACAACAAAAACTAGGTGTTCCACTACATTATTTGAGCTTCTAACAGAAATGAAGAACCAATCCTGTACAGAACAATCCAATTCCCAACCAAAATCACCATCAAATTTCACCTCAGAATGCTGGTTCGACGACGCGTGCATTCTAGACATGGATTACTTTGTGAAAACACTCTCTGGAATCAAAGCAAAAGGCGTTCGCGCCGATTTAATCGGTTCCATTATCACACACTATGCCTCCAAATGGCTACCTGACTTAGCTGAAAAGGGTCTAACACAATTTGAAGATACATCTTCATCTCCCGAGAGTGTAACAGCTTTATGGATGAAGAAAAGGTTCTTTGTAGAAACGTTAGTTAATGTTCTACCACCTGAGAAAGATTCAATTCCATGTAACTTCTTACTTAGGCTATTGAGAACTGCTAACATGGTTGGTGTTGATGGAAGCTATAGACAAGAGCTTGAGAAAAGAATTTCATGGCAGTTAGATCAAGCTTGTTTGAAGGAACTTGTTATACCTTCTTTTAGTCACACTTGTGGAACACTTTTGGATTTTGAACTTGTGATTAGGCTTGTTAAGAGGTTTGTTGGTTTGGATAATGAAGGTGCTAAAAGTGGTGCTGCTCTGGTTAAAGTTGCTAAGTTGGTTGATTCTTATCTTGCTGAAGCTGCTGTTGATGCTAATTTGAGTTTGGATGAGTTTGTTACTCTTGCTGCTGCTCTTCCAAGTCATGCTAGAAATACCGATGATGGTTTGTATAGAGCCATTGATACTTACCTAAAAGCACATCCAAGTGTATCAAAGCAAGAAAGGAAAGGCCTGTGCAGACTAATAGATTGCAGGAAACTAACACAAGAGGCATCACTTCATGCAGCGCAAAACGAAAGGTTCCCGGTGAGAGCAGTTATTCAAGTCCTTCTTTCTGAACAAACAAAGCTCAACAGACACAAGAACAGTCACAACATTGATTGGAGTGGATCCATAATGAGTATAACCAGAAGTCCAACAAATGGATTTGGACTAGAAGCAGTTCCAACGGCAAGGTGTTTATCGAAGCGCGAAATGAATGCTCAACACATCGAGATAAAGAAACTGAGGGAAGATGTTCATAGGCTGCAGAGTCAGTGCAGTGCAATGCAAGTTCAGATGGAGAGAATGGTTGAGAAGAAGAAAGGGTTTTTTAAATGGAGTAAGAGGTTTGGTGTGAGTGGTCTTGTTAAAGGAGAGAGTGTTGTGGAAGGAAGAAGAGGAGGAGATGGTTGTGTTGATGGTGATGGTCAGGTTGAGTTTGGAAGACAGACACCTGCTGCTAGTTCTGATATGAAAACTAGGTTGGTTAATGTCAAAGGAAATTGA 1371 0.4041 MSKTDSTTKTRCSTTLFELLTEMKNQSCTEQSNSQPKSPSNFTSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLAEKGLTQFEDTSSSPESVTALWMKKRFFVETLVNVLPPEKDSIPCNFLLRLLRTANMVGVDGSYRQELEKRISWQLDQACLKELVIPSFSHTCGTLLDFELVIRLVKRFVGLDNEGAKSGAALVKVAKLVDSYLAEAAVDANLSLDEFVTLAAALPSHARNTDDGLYRAIDTYLKAHPSVSKQERKGLCRLIDCRKLTQEASLHAAQNERFPVRAVIQVLLSEQTKLNRHKNSHNIDWSGSIMSITRSPTNGFGLEAVPTARCLSKREMNAQHIEIKKLREDVHRLQSQCSAMQVQMERMVEKKKGFFKWSKRFGVSGLVKGESVVEGRRGGDGCVDGDGQVEFGRQTPAASSDMKTRLVNVKGN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05508 456 Coils Coil 360 387 - -
Vifa2g05508 456 PANTHER OS12G0117600 PROTEIN 25 396 IPR043454 -
Vifa2g05508 456 Pfam NPH3 family 46 293 IPR027356 -
Vifa2g05508 456 ProSiteProfiles NPH3 domain profile. 45 317 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05508 Vifa-Chr2 1638865019 1638866875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05508 44 392 EF-hand Containing Proteins AT3G44820 33.421 3.49e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05508 - - cam:101500573 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05508 2 1638865019 1638866875 Vifa2g05508 2 1638865019 1638866875 ECH
Vifa2g05508 2 1638865019 1638866875 Vifa2g05508 2 1638865019 1638866875 PCT