Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05502 ATGGGCTCAGAAACCACTCCAAAGCTTCCACTAATTAACTTAAATAATCTCAACTTAGAAACCAAAAGTCCTAATTGGGAGTTAGTGAAGTCTCAAGTTTACAAAGCACTAGTAGAGTATGGTTGCTTTGAAGCAATTTTTGATAAAGTTTCTTTAGAGGTTCGCAAAGGTATATTTGATTCACTAGAAGAGCTTTTTGATCTTCCTTTACAAACCAAGCTACTCAATGTGTCGAAGAAGCCTTATCATGGTTATGTTGGTCAATATCCTATGATTCCACTTTATGAAAGCATGGGCATTGATGATGCAAATGTCTATGAGAAAGTCAAGAGCATGACTAACATGTTATGGCCACATGGAAACCAAAGTTTTAGCAAAACTATACATTCCTTCTCCAACGAGTTAACGGCGTTGGATCAGATTGTTAGGAAGATGATTTTAGAAAGTTTGAATGCTGAAAAGTACTTGGAGGAACACATGAACTCAACCAATTACCTTCTCCGAGTTATGAAATACAAAGGACCTCAAACAAGTGACACAAAGCTAGGACTTAGCACACACAGTGACAAGAATGTTGTGACCATATTGTACCAGAATCAAGTGGAAGGTTTAGAAGTTATGACCAAAGATGGAAAATGGATAAGTTACAAGCCTTCTTTTTCAAGTAGTTTTGTAGTTATGATTGGTGATTCTCTCCATGCTTGGTCAAATGGAAGGCTTCATTCTCCATTTCATCGGGTGATGATGAACGGGAATGAAGCTCGATATTCGACAGGACTGTTCTCTATCCCTAAAGAAGGGTGTATTATAAAAGCTCCGGAAGAGATGGTGGATGAAGAACACCCTTTGCTCTTTAAGCCTTATGATCATGTTGAGTTTCTTAAGTATTATTACTCTGAAAAAGGTCAAAGGGATCAAAATGCAATGCGCACTTTTTGTGGTGTTTGA 948 0.3766 MGSETTPKLPLINLNNLNLETKSPNWELVKSQVYKALVEYGCFEAIFDKVSLEVRKGIFDSLEELFDLPLQTKLLNVSKKPYHGYVGQYPMIPLYESMGIDDANVYEKVKSMTNMLWPHGNQSFSKTIHSFSNELTALDQIVRKMILESLNAEKYLEEHMNSTNYLLRVMKYKGPQTSDTKLGLSTHSDKNVVTILYQNQVEGLEVMTKDGKWISYKPSFSSSFVVMIGDSLHAWSNGRLHSPFHRVMMNGNEARYSTGLFSIPKEGCIIKAPEEMVDEEHPLLFKPYDHVEFLKYYYSEKGQRDQNAMRTFCGV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05502 315 SUPERFAMILY Clavaminate synthase-like 6 302 - -
Vifa2g05502 315 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 162 264 IPR005123 -
Vifa2g05502 315 Pfam non-haem dioxygenase in morphine synthesis N-terminal 9 87 IPR026992 -
Vifa2g05502 315 Gene3D - 7 313 IPR027443 -
Vifa2g05502 315 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 295 - -
Vifa2g05502 315 Pfam 2OG-Fe(II) oxygenase superfamily 159 261 IPR044861 -
Vifa2g05502 315 FunFam Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 2 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05502 Vifa-Chr2 1638232689 1638234014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05502 8 312 Glycosyltransferase AT5G59530 24.444 6.81e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05502 - - gmx:100784444 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05502 2 1638232689 1638234014 Vifa2g05502 2 1638232689 1638234014 ECH