Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05487 ATGGACCTTATTTCGGGTCTACCCGAAGATGTAGCCCGAGACTGTCTAATTCGGGTTTCATACCAACAGTTTCCGGCGGTGGCTTCGGTTTGTAAAGGGTGGAAGACAGAGATACATATGCCGGAGTATCACCGTCAACGGCGGAGAACCGGACATGCTCAAAGGGTTTTAGTTATGGTTCAAGCACGTGTTGAACCGGAAAAAACTGAAACCGGTTCGGCCAAAAGACTAAAAAACCCGATTTACCGGCTTAGTGTATTTGAACCGGAAAGTTGTAGCTGGAGTGAGTTACCGGCACCACCCGGTTATAGTTCAGGGTTACCGGTGATGTGTCAGTTAGCATGTGTTGGTTATGATCTTGTCGTGTTGGGTGGGTTAGATCCGGAAACATGGAAAGCATCGAATAATGTTTTTGTTTATAATTTCCTGTCGGCGAAGTGGCGTTGTGGGACCCACATGCCAGGTGGAGCTAGAACGTTTTTCGGTTGTTCGTCGGATGGTCGCCGGAATGTTTTTGTCGCCGGTGGTCATGATGATGAGAAGAACGCGTTGAAGTCGGCGTTGATTTATGATGTTGCGGCGGATGAGTGGGTTGAGCTGCCGGAGATGTCGTCGGAGCGTGATGAGTGTAAGGCGGTGTTCCGGCAAGGGAGGTTCGTTGTCGTCGGTGGTTATAGAACGGAGAATCAAGGGAGATTTGAAAGAAGCGCGGAAGCGTTTGATTTTGTGACGTGGAGGTGGGGCCAGGTTGAGGAGGAGTTCTTGGATTGTGCCACGTGTCCTATGACTTTGGTGGACGGTGGTGATGGTGGGGAGAGTGTTTATATGTGTCGCGGCGGGGAGTTGGTTACGATGAGGAGTCACACGTGGCAGAAGATGGGGAGGGTTCCGGATGAGATTTGCAACGTGGCGTATGTTGGAGCGTTCGATGGGGTTGTGGTTGTGATCGGATCAAGTGGATATGGGGAAGTGCATATGGGGTATGTTTTTGATGTGAAGAGGTGTAATTGGAGAAAATTGGATTGTCCAGATGGGTTTAAGGGTCATGTCCAAACCGGTTGTGTTTTGGAAATTTAG 1077 0.4968 MDLISGLPEDVARDCLIRVSYQQFPAVASVCKGWKTEIHMPEYHRQRRRTGHAQRVLVMVQARVEPEKTETGSAKRLKNPIYRLSVFEPESCSWSELPAPPGYSSGLPVMCQLACVGYDLVVLGGLDPETWKASNNVFVYNFLSAKWRCGTHMPGGARTFFGCSSDGRRNVFVAGGHDDEKNALKSALIYDVAADEWVELPEMSSERDECKAVFRQGRFVVVGGYRTENQGRFERSAEAFDFVTWRWGQVEEEFLDCATCPMTLVDGGDGGESVYMCRGGELVTMRSHTWQKMGRVPDEICNVAYVGAFDGVVVVIGSSGYGEVHMGYVFDVKRCNWRKLDCPDGFKGHVQTGCVLEI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05487 358 Pfam Kelch motif 171 204 IPR006652 GO:0005515
Vifa2g05487 358 Pfam Kelch motif 113 154 IPR006652 GO:0005515
Vifa2g05487 358 CDD F-box_AtAFR-like 3 47 - -
Vifa2g05487 358 Pfam F-box domain 4 39 IPR001810 GO:0005515
Vifa2g05487 358 SUPERFAMILY Kelch motif 79 340 IPR015915 GO:0005515
Vifa2g05487 358 SMART kelc_smart 119 167 IPR006652 GO:0005515
Vifa2g05487 358 SMART kelc_smart 170 217 IPR006652 GO:0005515
Vifa2g05487 358 Gene3D - 70 344 IPR015915 GO:0005515
Vifa2g05487 358 SUPERFAMILY F-box domain 1 51 IPR036047 GO:0005515
Vifa2g05487 358 PANTHER OS02G0208700 PROTEIN 2 358 IPR044595 GO:0080037|GO:2000762
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05487 Vifa-Chr2 1632894721 1632895797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05487 7 211 Miscellaneous Gene Families AT4G33900 25.346 5.20e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05487 - - gmx:100796602 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05487 2 1632894721 1632895797 Vifa2g05487 2 1632894721 1632895797 ECH