Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05454 ATGGCTCACACTAAGAAAGAAGTAGAAAACCCTAAATTCTCAGCATTCCCTTTCAAACCCTATTCCATCCAAATCGATTTCATGAACGCACTCTACCAATCTCTCAACCAAGGTGGCATCTCCATGCTAGAAAGCCCAACCGGTACTGGAAAAACCATGAGTGTAATCTGTAGTGCTTTGCAATGGGTAATGGATCGTAGGCGACAAGAAGAAGAAGAAAAGGCTGTAGGGTTAGTGAATGGGAAGAATCAAGGTTCAGGTTCAGATGATGAACCTGATTGGATGAGAGAATTTGTTGTTAATAATAATGATAAGCAATTCAAAGAGGAAAAAAGAAAGAATAAGAAGGAAAAAATTAGGTCTGTGTTAGGAAAATCTGGTAATGATGTTAAAAAAGGTAGTAATGGTAGTTTGAAGAAGAAGATTGATGGAGTGGGTGGTGATGAAGAGGAGTTTTTGCTTGAAGAATACGAGAGTGAAGATGAGAAAGCTAGTGGTAATGGTAGTGGTGTAGTGCCTAAGAGGAAAGTGAGTAGAAGTAGTTCTAGTTCTTCGAGTGAAGATGAGTCTGATGATGACAATGAGGATGATGGAGAGGAGAAGAAGTTTAAGGTTTATTTTTGTAGTAGGACACATTCGCAGCTTTCGCAGTTTGTGAAGGAGTTGAGGAGGACGGTGTTTGCTGATGAGATGGGAGTTGTGAGTTTGGGTTCCAGGAAGAATCTTTGTATTAATAAAGAAGTACTTGCGATTGGAAACGCTGCAGGTGTAAATGAGCGATGCTTGGAACTTCAAAAGAAAAAGAAAAATGATGCGTCAAAAGTTAAGAACTTAAAATTAGGCACAGGAGCACACAGAACAAAAGCCTCCTCAGGCTGCCCAATGCTTAAAAAACATAGACTGCAACGAGAATTCAGGAATGAGATATCTCAACAAGGGCCTTTGGATATTGAAGATCTTGCTAACCTTGGAAAAACTATGGGAACTTGTCCATACTATGGCTCTAGAAGCTTGGTTCAGAAAGTTGATCTTGTGGTCCTGCCATATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTTGGTCTAAATTTGAAATCCAACATTGTTATAATAGACGAGGCTCATAATTTGGCTGATTCACTCATCAGCATGTATGACTCCAAAATTACTATGTCACAGCTAGAAAATGTGCATCGCCATGTTGAGCGGTACTTTGTGAGATTCCGGAACCTTTTGGGACCTGCTAATAGGAGATATATTCAAACTCTGATGGTCCTCATACACGAATTTCTCCGAGTACTACTCAATGAAAAAGATGGAAGTCTCGTAGATTTGCGTCCTGATATAGAACAGGCTTCTGAAGAAAGGAAAGCCTCGGATTTTACTATGGCCATCAATGATTTTTTATTTGAACTAAATATAGACAATATCAACTTGGTCAAATTGCTAAAGTACATAAAGGAAAGCCATATCATGCACAAGGTAAGTGGCTATGGAGAAAAGCTGGCTACATTGGAGAAGGTATCAGCACTTAATATAGCAGGGGAACACGGTGAAGATGGAAGCTGTCAGTCTGCTTTCCAGGCATTAGCCGACATGTTGCTATCACTTGTAAATAAGGACAGTGATGGAAGGATAATAATTTCCAGGTCAAGTTCAACAAGCTTCAGGAAACAAGGTCAAGGATATATTAAATATGTTATGCTCAGCGCAGAGAAGATTTTCTCCGAGATTGTAGATGAAGCACATGCCGTTGTGTTAGTAGGAGGAACACTTCAGCCAATAGAAGAAACAAGGGAGAGACTTTTTCCATGGTTACCACCAGATCAGTTGCATTTCTTTTCTTGTGGTCATATTGTCCCTCCTGAGAGCATTATGCCAATTGCAGTTTCCCGTGGGCCTACTGGCCGCTCCTTTGATTTTAGCTACAGCTCCAGGAGCTCAGCAGACATGATGCGAGAACTAGGTCTTTTGTTATGCAACTTGATTACTGTTGTTCCCCAAGGAATTGTAGTTTTCTTCCCTTCTTTTGATTATGAAAGTAGAGTCTATGAAAACTGGGAGTCTTCTGGCATCCTCAAAAGGATTACAAAGAAGAAACGTGTCTTTAGAGAGCCTAGAAATAATATGGATGTTGAATCTGTTCTTAAGGAATACAAAGATACCATTTATTCTCCATCAAGTGTGAATTCAGAAGTGAATCAAGCATCTCATACCGGTGCAGTACTTCTCGCTGTTGTTGGTGCAAAGTTATCTGAAGGGATCAACTTGAGTGATGGAATGGGTCGGTGCATACTCATGGTTGGTCTACCATATGCTAGCCCTTCTGACATTGAATTATTGGAGAGGATAAAACATATTGATGGTTTTAGAAATCCCAAGTCCCTTAAAAATCCTGCATTTTCTGCTGGTTATGATGTATATGGTGGAGATATACTAAGTGGTTTTGGCATATTAAGAAGTTGCAGTTACCGGGGAAAAGAGTATTACGAGAATCTCTGCATGAAGGCTGTAAATCAATCAATAGGTAGAGCGATTCGTCACATCAATGACTATGCAGCTATTTTATTGGTTGACACAAGGTATGCATCTGATTCCTCAAAAAGGAGCTTCACCCACCCAACCACCAAGCTCCCTAACTGGATAAAAGATCGCCTTGTTTCTTCTAAAAACTACGGGGAAGTGCATAGGTTGCTGAGTCAGTTTTTCAAACTCAAAAAGACATGTTGCCAATAG 2739 0.4005 MAHTKKEVENPKFSAFPFKPYSIQIDFMNALYQSLNQGGISMLESPTGTGKTMSVICSALQWVMDRRRQEEEEKAVGLVNGKNQGSGSDDEPDWMREFVVNNNDKQFKEEKRKNKKEKIRSVLGKSGNDVKKGSNGSLKKKIDGVGGDEEEFLLEEYESEDEKASGNGSGVVPKRKVSRSSSSSSSEDESDDDNEDDGEEKKFKVYFCSRTHSQLSQFVKELRRTVFADEMGVVSLGSRKNLCINKEVLAIGNAAGVNERCLELQKKKKNDASKVKNLKLGTGAHRTKASSGCPMLKKHRLQREFRNEISQQGPLDIEDLANLGKTMGTCPYYGSRSLVQKVDLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLISMYDSKITMSQLENVHRHVERYFVRFRNLLGPANRRYIQTLMVLIHEFLRVLLNEKDGSLVDLRPDIEQASEERKASDFTMAINDFLFELNIDNINLVKLLKYIKESHIMHKVSGYGEKLATLEKVSALNIAGEHGEDGSCQSAFQALADMLLSLVNKDSDGRIIISRSSSTSFRKQGQGYIKYVMLSAEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPWLPPDQLHFFSCGHIVPPESIMPIAVSRGPTGRSFDFSYSSRSSADMMRELGLLLCNLITVVPQGIVVFFPSFDYESRVYENWESSGILKRITKKKRVFREPRNNMDVESVLKEYKDTIYSPSSVNSEVNQASHTGAVLLAVVGAKLSEGINLSDGMGRCILMVGLPYASPSDIELLERIKHIDGFRNPKSLKNPAFSAGYDVYGGDILSGFGILRSCSYRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSFTHPTTKLPNWIKDRLVSSKNYGEVHRLLSQFFKLKKTCCQ 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05454 912 Coils Coil 911 912 - -
Vifa2g05454 912 MobiDBLite consensus disorder prediction 156 198 - -
Vifa2g05454 912 MobiDBLite consensus disorder prediction 89 125 - -
Vifa2g05454 912 CDD SF2_C_XPD 624 863 - -
Vifa2g05454 912 Gene3D - 181 427 IPR027417 -
Vifa2g05454 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 10 424 IPR014013 GO:0005524
Vifa2g05454 912 SMART Cxpdneu3 678 865 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vifa2g05454 912 Pfam Helicase C-terminal domain 660 874 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vifa2g05454 912 Pfam DEAD_2 207 395 IPR010614 GO:0003677|GO:0003678|GO:0005524
Vifa2g05454 912 MobiDBLite consensus disorder prediction 73 143 - -
Vifa2g05454 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 407 IPR027417 -
Vifa2g05454 912 Gene3D - 638 879 IPR027417 -
Vifa2g05454 912 Gene3D - 17 86 IPR027417 -
Vifa2g05454 912 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 13 905 IPR045028 -
Vifa2g05454 912 SMART deadxpd 12 418 IPR006554 GO:0003678|GO:0016818
Vifa2g05454 912 NCBIfam DNA repair helicase (rad3) 156 786 IPR013020 GO:0003678
Vifa2g05454 912 SMART ultradead3 16 453 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05454 Vifa-Chr2 1624012871 1624017993 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05454 K11273 - gmx:106794132 1325.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05454 2 1624012871 1624017993 Vifa2g05454 2 1624012871 1624017993 ECH