Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g05451 | ATGGCTTCTCGCCGCCGCATGTTGTTAAAAGTCATAATCCTCGGAGACAGTGGGGTTGGTAAAACATCGTTGATGAATCAGTATGTGAATCGGAAGTTTAGTAATCAGTATAAGGCTACCATTGGTGCTGATTTTCTCACCAAAGAAGTTCAATTTGAAGACAGGTTGTTCACATTGCAGATTTGGGATACTGCTGGTCAAGAGCGGTTTCAGAGTCTTGGTGTGGCTTTCTACCGTGGTGCTGATTGCTGCGTCCTCGTTTATGATGTTAATGTCCTGAAATCTTTTGAAAACCTTAACCATTGGAGAGAAGAGTTTCTCATTCAGGCTAGTCCATCTGACCCCGAAAACTTCCCGTTTGTTGTCTTGGGAAACAAAATAGACGTTGATGGTGGAAACAGCAGAGTTATTTCTGAGAAGAAAGCAAAGGCATGGTGTGCTTCAAAGGGAAACATACCATACTTTGAGACCTCTGCAAAAGAAGGATTTAATGTTGAAGCTGCTTTCCAGTGTATAGCTAAAAATGCACTCAAGAATGAACCTGAAGAAGAAATGTATCTGCCCGACACAATCGATGTGGGAAATGGTGGACGACAGCAAAGATCTACTGGCTGTGAATGTTGA | 624 | 0.4247 | MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVLKSFENLNHWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEMYLPDTIDVGNGGRQQRSTGCEC | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g05451 | 207 | Gene3D | - | 1 | 190 | IPR027417 | - | |
| Vifa2g05451 | 207 | ProSiteProfiles | small GTPase Rab1 family profile. | 4 | 207 | - | - | |
| Vifa2g05451 | 207 | ProSiteProfiles | small GTPase Rho family profile. | 2 | 176 | - | - | |
| Vifa2g05451 | 207 | PRINTS | Transforming protein P21 ras signature | 116 | 129 | - | - | |
| Vifa2g05451 | 207 | PRINTS | Transforming protein P21 ras signature | 50 | 72 | - | - | |
| Vifa2g05451 | 207 | PRINTS | Transforming protein P21 ras signature | 9 | 30 | - | - | |
| Vifa2g05451 | 207 | PRINTS | Transforming protein P21 ras signature | 154 | 176 | - | - | |
| Vifa2g05451 | 207 | PRINTS | Transforming protein P21 ras signature | 32 | 48 | - | - | |
| Vifa2g05451 | 207 | CDD | Rab7 | 9 | 182 | - | - | |
| Vifa2g05451 | 207 | SMART | ran_sub_2 | 14 | 201 | - | - | |
| Vifa2g05451 | 207 | PANTHER | RAB FAMILY | 1 | 205 | - | - | |
| Vifa2g05451 | 207 | ProSiteProfiles | small GTPase Ras family profile. | 3 | 207 | IPR001806 | GO:0003924|GO:0005525 | |
| Vifa2g05451 | 207 | SMART | rho_sub_3 | 11 | 179 | IPR001806 | GO:0003924|GO:0005525 | |
| Vifa2g05451 | 207 | Pfam | Ras family | 10 | 177 | IPR001806 | GO:0003924|GO:0005525 | |
| Vifa2g05451 | 207 | SMART | rab_sub_5 | 9 | 179 | - | - | |
| Vifa2g05451 | 207 | SMART | ras_sub_4 | 6 | 179 | - | - | |
| Vifa2g05451 | 207 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 5 | 186 | IPR027417 | - | |
| Vifa2g05451 | 207 | FunFam | Ras-related protein Rab7 | 1 | 189 | - | - | |
| Vifa2g05451 | 207 | NCBIfam | small GTP-binding protein domain | 10 | 172 | IPR005225 | GO:0005525 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g05451 | Vifa-Chr2 | 1623454160 | 1623457295 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g05451 | K07897 | - | gmx:100305824 | 420.239 |