Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05449 ATGGCATCCATATCCGTTCTCCTCGTCGCTCAAGTAATGCCCTACCTAGAACAAGAACTCACCAAACGCTACAACCTTCTCCGCATATGGGATTTCCCTCAAAAATCGACCCTCTTATCTCAACACGCCCCGTCGATCCGTGCCGTTGTCGGAAGCTCGGGCGCCGGCGCCGATTCTGAATTCATTGACTCGCTGCCGAAGCTGGAAATCGTTTCGAGCTTCAGCGTTGGTGTTGATAAGATTGATATTGACAAGTGTAAGGAGAAAGGGATTCGTGTGACGAATACTCCTGATGTGTTGACTGATGAGGTTGCTGATTTGGCTATTGGTTTGATTCTTACGCTTTTGAGGAGGATTTGTGAGTGTGATCGATTTGTTAGAGCTGGGAATTGGAAGCGTGGTGATTATAAATTGACTACTAAGTTCTCTGGAAAAAACGTTGGTATTATCGGGCTGGGAAGGATTGGCACGGCAATTGCCAAGAGAGCTGAAGGTTTTAATTGTCCAATAAGCTACTATTCCAGAACTCAAAAGCAGGAGTCAGAATACAAGTACTATTCAAGTGTTGTTGAGCTAGCATCCAACTGCGACATACTGGTCGTTGCCTGCCCTCTTACGGAGCAAACCCATCACATCATCAACCGAGAGGTCATTAATGCACTTGGTCCAAAAGGTTTCCTAATTAACATCGGCCGAGGTAAGCATGTTGATGAGCCAGAACTGGTCTCTGCATTGGTTGAAGGTCGTTTGGGTGGAGCTGGACTCGATGTTTTTGAAAACGAGCCTCATGTTCCCGAAGAGCTGTTTGGGCTAGATAATGTTGTCTTGTTGCCTCATGTTGGAAGTGCTACAGTAGAAACTCGAACTGCCATGGCTGACCTTGTTCTTGGAAATCTGGAGGCTCATTTCCTTGGAAAGCCACTTTTAACTCCATTGGTTTAA 942 0.4607 MASISVLLVAQVMPYLEQELTKRYNLLRIWDFPQKSTLLSQHAPSIRAVVGSSGAGADSEFIDSLPKLEIVSSFSVGVDKIDIDKCKEKGIRVTNTPDVLTDEVADLAIGLILTLLRRICECDRFVRAGNWKRGDYKLTTKFSGKNVGIIGLGRIGTAIAKRAEGFNCPISYYSRTQKQESEYKYYSSVVELASNCDILVVACPLTEQTHHIINREVINALGPKGFLINIGRGKHVDEPELVSALVEGRLGGAGLDVFENEPHVPEELFGLDNVVLLPHVGSATVETRTAMADLVLGNLEAHFLGKPLLTPLV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05449 313 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 5 135 - -
Vifa2g05449 313 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 6 308 - -
Vifa2g05449 313 Gene3D - 17 307 - -
Vifa2g05449 313 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 8 310 IPR006139 GO:0016616|GO:0051287
Vifa2g05449 313 FunFam Putative 2-hydroxyacid dehydrogenase 101 284 - -
Vifa2g05449 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 282 IPR036291 -
Vifa2g05449 313 Gene3D - 101 284 - -
Vifa2g05449 313 CDD HPPR 4 303 - -
Vifa2g05449 313 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 IPR029752 -
Vifa2g05449 313 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 281 IPR006140 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05449 Vifa-Chr2 1623308739 1623311419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05449 - K15919 mtr:11418154 564.303