Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05340 ATGGTCGCAAAAGCCATGGCCGCGACTTCGCGTGAAAACCTCGCAAGTCTCATCCACTCAGCCAAATTGGCCATTGACATACCTTCAAAGCTCGACTCATTGCGCAAATTGAAGACCGAACTACCTCAAGAAGATCCTGTCATTCTCACCGAGTTTCTCCCTCCGCTTTTCGACTTCCTCTCGGATCGTTTCAGTCCTGTTCGCAAATTTGTTACAGAGATGATTGGTGAAATTGGATTGATGAACACTGAATTCTTGCCTGATATTGTGCCTGTGTTGATTGATGTTTTGGATGATGATACACCGGCTGTTGTTCGACAAGCTATACTGTGTGGAATCGATTTGTTTCCTTACACACTCGAGAAAATCGCGGTTCAGGGTCTATATTCTAGTGATTTAGACAGCGCAGTTGAATCTGCGTGGGAGTGGATGATTAAATTCAAAGACAAAGTATACTCAATAGCATTTCAAAATGGAAGGGGTGGAGCAAAGCTGCTGGCATTGAAGTTTGTTGAAGCAGTTATTCATCTTTACACACTTGATCCTAATGGTTCCACAGAACCCACTTCTCATCAAGGAAAACAACCGGTATTTAATATCTCGTGGCTGAGGCGGGATCATCCTGTACTTAACATTGGAGATTTGTCAATGGAAGCCAGTCATAATTTGGGTCTCTTGCTTGATCAACTTAGGTTTCCAACTGTGAAGTCTCTTAGTAACTCAGTAATCATTGTGCTGATTAAAAGCCTTTCAGCAATTGCTATAGACAGGCCTGCATTCTATGGTCGCATCTTGCCAGTTTTGCTCAGTTTGAAACCCTCAAGCTCTGTTGTTAATGGGGTGTGTGTGTCTGCGGCACATCTTGCTCTAAAGAAGGCCTTTCTTACGTGCACGAAATGTACACATCCAAGTGCTGCCCCGTGGAGAGAACGTTTGGCAGGTGCCTTGAAGGAGATGCAGTCCGAAGGGAAGGCAGATCAGGTGTTCCAGCCAATCTCTGCAAGTAATGGAAGTACATTACCAAGAGAGGATTATCAACCAGTTATCAAGGAAGAGGATGCTGCAGTAAATTTGTTTGATTCAGGGCACATAAATTTAGGAAGAAAACGATCAGGATCACCAAATGGAGGTGATTTAGCTGAAGATGCAGATGTTCCTGGAAAACGTATTAGAACAGCAACAGATGGTTTACAACATAAACCTAAAATGGAATTAGATGATGGTACTGCTAACACACAGGATGACACTCCTTCGACTGCACTAGCATCTTCAAAAGGAGATGCAGATAATGGGCCTGTACAGCAGCTTGTTGCCATGTTTGGTGCTTTGGTTGCTCAAGGTGAAAAGGCTGTTGCATCTTTGGAAATTCTTATCTCAAGTATTTCTGCTGACTTACTAGCTGAGGTGGTGATGGCAAATATGCGCTATCTACCTCCAAATTGCCCTAATGCTGAAGGAAATGATGAACAGTTGCATGATATTAGTATATTTGGTTCTCACGACAAGGCTAAATATCCACAATCATTTGTGGCTGGTGTTATGTCACTTTCTAGTACTTTCCCGCCCGTTGCTTCACTTCTTGATGCTCATATATCAGTGTCCAATGTTCATCAATCAGGGTCCAATGTTCACCAATCAGTGTCCAATGTTCATCAATCAGGGTCCAATGTTCATCAATCAGTGTCCAATGATTTAGTGAAATCTCACGGGGAGGAAGAAATTTCTTCAACTGGAGTAGATAGCAGTGTTATGCATTCTGGCATGATTCTTTCATCTCAAAATGCACAATCACCTACTGATTTTCCATCTTCTGATACTTGTATACCTGGAGTGGAGAATGTCAGCACAACTCTGCCTTGTGACATAGATGACGTTGGCAACTTAGAGAGTGGAATCCCTGGTCTGGATTCTTTTGGTCGAAATGATGCATTGTCAGAAACTTTGGCTGCTCCCTCATTGGTTTCCTCTGATATGCAAATAGAAGATGCCAGTCAAGAGCAAGTTACTAGTTTGGATAATAGCCCACCCTTGAGCTTAGTTCCTTCAATATCAGCAGATAAATCTGAGGAGCTAAGCCCAAAAACAGTTGCTACAGATGTCAATAGTTTGGTGTCCTCAACAGCTACTTCAGTTGTGTTGCCTTCTCGTCTAGTCTTGCCAACGATGATTGCTCCAGTCGTTGATCTTGCAGATGAACAGAAGGATCATTTGCAAATATCATGTTTTATGCGTATCATTGATGCATATAAGCAAATATCTGTAGCTGGAGGCTCAAAAGTTCGATTTTCAATACTTGCTTATTTAGGAGTTGAGTTTCCTTTGGAGTTAGACCCGTGGAAATTGTTACAAAAGCATATTTTGGTTGATTACTCTAGTCATGAGGGACATGAGTTGACATTGCGTGTCCTCTACAGGTTATTTGGTGAGGCTGAAGTGGAGCCTGACTTCTTTTCTTCCACAACTGCAGCTTCTGTATATGAAACATTCCTCCTAACAGTGGCAGAAGCACTTAGAGATTCTTTTCCACCTTCGGATAAATCATTAAGTAAACTGCTCGGTGAATCTCCTTATTTGCCAAAATCAGTTTTAAAAATTTTAGAGAACATGTGTTCTCCTGGAAATGGGGATAAAGTTGAAAAGGAATCATACGCATTGAATGCGGATAGAGTTACTCAAGGTCTAAGTGCTGTATGGAGTTTGATTCTTCTAAGGCCTCCCATTCGGGATACTTGCTTAAAAATTGCTTTACAGAGTGCAGTGCATCACTTGGAAGAAGTGCGCATGAAAGCAATTCGTCTGGTAGCAAATAAACTTTATCCTTTATCATCAATTTCTAAGCAAATAGAAGATTTTGCAAAGGAAATGATGTTCTCAGTGAAGAGTAGTGACGCTTCTGAAGCTACAGATGCTGAAGGGTCCGTTGCTGATTCACAAAAGCTTGCAAATGAACCACTGTCTTTGAGTGGCAGTACTAAGGATGTCTCAGATAATCGGCAACCAAGCACATCTGAGGCCACCTCACTACTTTCAGTTTCTGAGGCTCAGAGGGGCATGTCTTTGTATTTTGCTTTGTGCACAAAGAAACACTCCCTCTTCCGCGAAATATTTGTCATCTATAGAAACACATCAAAAGCAGCAAAGCAGGCTATTCATCGTCAGATTCCCATGCTAGTTCGTACATTGGGTTCATCTTCAGTTCTCCTTGAAATTATATCAGATCCCCCAAATGGAAGTGAGAAACTCCTAATGCAGGTGTTGCATACACTTACTGATGGTACAATCCCTTCTAAGGATTTAATATTTACTGTGAAAAGGTTACATGATTCAAAACTTAAGGATGCAGAGATTCTTATTCCAATATTGCCATTCCTACCGAAAAATGAGGTAATGCCGGTTTTTGCCAACATTGTTAAGATGCCTTTTGAGAAGTTTCAAGAAGCACTTGGTCGCATATTGCAGGGATCATCACAATCTGGTCCGGTGCTTACACCAGCTGAAATATTAATTGCTATTCATGGAATTGATCCTGAAAGAGATGGAATTCCCTTAAAAAAGGTAACTGATGCATGCAATGCTTGCTTTGAGAAGCGACAAACTTTTACCCAAGAAGTTCTTGCCAAAGTTTTGAATCAATTGGTTGAGCAAATTCCTCTTCCTTTATTGTTCATGCGTACGGTATTACAAGCAATAAATGCTTTTCCAACATTGGTGGATTTTATTATGGGGATTCTCGCTCGCCTTGTGAAGAAGCAGATATGGAAACAACCCAAGCTATGGGTGGGATTCGTGAAGTGTTTGCAATTGACAAAACCTCAGTCATTTGGTGTTTTGCTTCAGCTACCTCCACCACAATTGGAAGCTGCATTAAATAAAGTTCCTGCACTGAAGGCACCATTGATTGCTCATGCTAGCCAGCCTGATATACAATCTTCACTTCCGAGGTCTGTGCTGGTTGTTCTAGGCATTGTTTCCGATTCTCAGGTTTCAAGTCAGCCACAAACTAGCCAAACACAGACAGTTGAAACAAGCAACTCAGATAAGGACACAATGACTGAAAAATCCAAAGAATCGTCTGCAGCGAGCTAA 4086 0.4163 MVAKAMAATSRENLASLIHSAKLAIDIPSKLDSLRKLKTELPQEDPVILTEFLPPLFDFLSDRFSPVRKFVTEMIGEIGLMNTEFLPDIVPVLIDVLDDDTPAVVRQAILCGIDLFPYTLEKIAVQGLYSSDLDSAVESAWEWMIKFKDKVYSIAFQNGRGGAKLLALKFVEAVIHLYTLDPNGSTEPTSHQGKQPVFNISWLRRDHPVLNIGDLSMEASHNLGLLLDQLRFPTVKSLSNSVIIVLIKSLSAIAIDRPAFYGRILPVLLSLKPSSSVVNGVCVSAAHLALKKAFLTCTKCTHPSAAPWRERLAGALKEMQSEGKADQVFQPISASNGSTLPREDYQPVIKEEDAAVNLFDSGHINLGRKRSGSPNGGDLAEDADVPGKRIRTATDGLQHKPKMELDDGTANTQDDTPSTALASSKGDADNGPVQQLVAMFGALVAQGEKAVASLEILISSISADLLAEVVMANMRYLPPNCPNAEGNDEQLHDISIFGSHDKAKYPQSFVAGVMSLSSTFPPVASLLDAHISVSNVHQSGSNVHQSVSNVHQSGSNVHQSVSNDLVKSHGEEEISSTGVDSSVMHSGMILSSQNAQSPTDFPSSDTCIPGVENVSTTLPCDIDDVGNLESGIPGLDSFGRNDALSETLAAPSLVSSDMQIEDASQEQVTSLDNSPPLSLVPSISADKSEELSPKTVATDVNSLVSSTATSVVLPSRLVLPTMIAPVVDLADEQKDHLQISCFMRIIDAYKQISVAGGSKVRFSILAYLGVEFPLELDPWKLLQKHILVDYSSHEGHELTLRVLYRLFGEAEVEPDFFSSTTAASVYETFLLTVAEALRDSFPPSDKSLSKLLGESPYLPKSVLKILENMCSPGNGDKVEKESYALNADRVTQGLSAVWSLILLRPPIRDTCLKIALQSAVHHLEEVRMKAIRLVANKLYPLSSISKQIEDFAKEMMFSVKSSDASEATDAEGSVADSQKLANEPLSLSGSTKDVSDNRQPSTSEATSLLSVSEAQRGMSLYFALCTKKHSLFREIFVIYRNTSKAAKQAIHRQIPMLVRTLGSSSVLLEIISDPPNGSEKLLMQVLHTLTDGTIPSKDLIFTVKRLHDSKLKDAEILIPILPFLPKNEVMPVFANIVKMPFEKFQEALGRILQGSSQSGPVLTPAEILIAIHGIDPERDGIPLKKVTDACNACFEKRQTFTQEVLAKVLNQLVEQIPLPLLFMRTVLQAINAFPTLVDFIMGILARLVKKQIWKQPKLWVGFVKCLQLTKPQSFGVLLQLPPPQLEAALNKVPALKAPLIAHASQPDIQSSLPRSVLVVLGIVSDSQVSSQPQTSQTQTVETSNSDKDTMTEKSKESSAAS 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05340 1361 SUPERFAMILY ARM repeat 46 944 IPR016024 -
Vifa2g05340 1361 Gene3D - 1 338 IPR011989 -
Vifa2g05340 1361 MobiDBLite consensus disorder prediction 410 428 - -
Vifa2g05340 1361 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1351 - -
Vifa2g05340 1361 MobiDBLite consensus disorder prediction 382 409 - -
Vifa2g05340 1361 MobiDBLite consensus disorder prediction 1326 1361 - -
Vifa2g05340 1361 MobiDBLite consensus disorder prediction 1326 1345 - -
Vifa2g05340 1361 Pfam Symplekin tight junction protein C terminal 1113 1291 IPR022075 -
Vifa2g05340 1361 MobiDBLite consensus disorder prediction 365 428 - -
Vifa2g05340 1361 MobiDBLite consensus disorder prediction 984 1008 - -
Vifa2g05340 1361 Pfam Symplekin/PTA1 N-terminal 102 320 IPR032460 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05340 Vifa-Chr2 1590072509 1590087419 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05340 K06100 - gmx:100779360 1960.65