Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05291 ATGGTTGCTGATTCCAAGTCCAAATCTGACATCTCATTTGCTGGAACATTTGCCAGCAGTGCTTTCTCCGCATGTTTCGCTGAGGTATGTACCATACCTTTGGACACTGCCAAAGTTAGGCTTCAGCTTCAAAAACAAGCTGTAGCTGGTGATGTATCCTCCTTACCTAAGTACAAGGGTATGCTGGGAACGGTTGGAACAATTGCCAGGGAAGAAGGTCTTTCAGCGCTCTGGAAGGGCATTGTGCCAGGACTACATCGTCAGTGTTTGTATGGAGGATTAAGAATTGGGTTATACGAGCCTGTTAAGACTTTTTATACGGGAAGTGACCATGTTGGTGATGTTCCGCTGTCAAAGAAAATTCTAGCTGCATTTACGACTGGTGCCGTGGCAATTACAGTGGCGAATCCAACTGATCTTGTCAAAGTCAGACTTCAAGCAGAAGGAAAGTTACCTCCTGGGGTTCCCAGGCGCTACTCTGGATCTTTAAATGCTTATTCGTCAATCGTGAGACAGGAAGGAGTTAGAGCTCTTTGGACAGGGCTTGGACCCAACATAGCAAGAAATGGTATTATCAATGCTGCTGAACTAGCTAGCTATGATCAAGTGAAGCAGACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTCTTTGCTGGCCTTGGGGCAGGGTTTTTCGCCGTTTGTATCGGCTCCCCAGTTGATGTGGTCAAGTCGAGAATGATGGGAGATTCTACTTACAAAAGCACCCTTGATTGTTTTGTCAAAACCTTAAAGAATGATGGACCCTTGGCATTTTATAAAGGGTTCATCCCAAATTTTGGACGACTAGGATCTTGGAACGTGATCATGTTTCTAACCCTAGAACAGACTAAAAAGTTCGTCAAAAGTTTAGAGTCATCATCGTGA 921 0.4408 MVADSKSKSDISFAGTFASSAFSACFAEVCTIPLDTAKVRLQLQKQAVAGDVSSLPKYKGMLGTVGTIAREEGLSALWKGIVPGLHRQCLYGGLRIGLYEPVKTFYTGSDHVGDVPLSKKILAAFTTGAVAITVANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSSIVRQEGVRALWTGLGPNIARNGIINAAELASYDQVKQTILKIPGFTDNVVTHLFAGLGAGFFAVCIGSPVDVVKSRMMGDSTYKSTLDCFVKTLKNDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQTKKFVKSLESSS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05291 306 Gene3D Mitochondrial carrier domain 14 305 IPR023395 -
Vifa2g05291 306 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 13 297 - -
Vifa2g05291 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 119 206 IPR018108 -
Vifa2g05291 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 298 IPR018108 -
Vifa2g05291 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 105 IPR018108 -
Vifa2g05291 306 FunFam Mitochondrial uncoupling protein 1 14 303 - -
Vifa2g05291 306 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Vifa2g05291 306 Pfam Mitochondrial carrier protein 114 209 IPR018108 -
Vifa2g05291 306 Pfam Mitochondrial carrier protein 10 108 IPR018108 -
Vifa2g05291 306 Pfam Mitochondrial carrier protein 216 300 IPR018108 -
Vifa2g05291 306 PRINTS Mitochondrial brown fat uncoupling protein signature 99 111 IPR002030 GO:0006839|GO:0031966
Vifa2g05291 306 PRINTS Mitochondrial brown fat uncoupling protein signature 18 30 IPR002030 GO:0006839|GO:0031966
Vifa2g05291 306 PRINTS Mitochondrial brown fat uncoupling protein signature 46 65 IPR002030 GO:0006839|GO:0031966
Vifa2g05291 306 PRINTS Mitochondrial brown fat uncoupling protein signature 169 186 IPR002030 GO:0006839|GO:0031966
Vifa2g05291 306 PRINTS Mitochondrial brown fat uncoupling protein signature 212 230 IPR002030 GO:0006839|GO:0031966
Vifa2g05291 306 PRINTS Mitochondrial brown fat uncoupling protein signature 287 306 IPR002030 GO:0006839|GO:0031966
Vifa2g05291 306 SUPERFAMILY Mitochondrial carrier 10 294 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05291 Vifa-Chr2 1573111154 1573115986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05291 8 305 Miscellaneous Gene Families AT3G54110 82.609 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05291 K15103 - gmx:100809667 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01102 5 324908812 324912365 Vifa2g05291 2 1573111154 1573115986 PCT