Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05087 ATGCGATTCAAGCTAGGTAAACGAGTGGTCCGGTTCACACGATGTTTCTTCCGCAGATTCTGGACCCGACCCGTATACGTCCGTCTCGGTTCCTCACCGGAGAAGAGTAACAATATGAAGAAGCTTCTAACATGGGGTAAAAAGTTAACCACAAAAGCAAAGTCTCTATGCTCCAAGAAAAACTCCAGTTATTTACCGGTTGGGTCAGACCCGGTTCAGGGAAACGGTTCAAGTTCAACGGTTCCGAAGGGCTATTTAGCGGTTTATGTGGGTCAGAAAGACGGTGATTTTCGTCGGGTTTTGGTGCCGGTGGTTTATTTTAACCATCCTTTGTTCAGTGAATTGTTGAAAGAAGCTGAAAAGGAGTATGGGTTTTATCATCAAGGTGGGATTACGATTCCTTGTAGGGTGAATGAGTTTGAACGGGTGAAGACCCGGATAGAATCCGGGTCGGGTGTACGGAGATTGACGCGGCGGAGGGTTTGGTGA 489 0.4724 MRFKLGKRVVRFTRCFFRRFWTRPVYVRLGSSPEKSNNMKKLLTWGKKLTTKAKSLCSKKNSSYLPVGSDPVQGNGSSSTVPKGYLAVYVGQKDGDFRRVLVPVVYFNHPLFSELLKEAEKEYGFYHQGGITIPCRVNEFERVKTRIESGSGVRRLTRRRVW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05087 162 Pfam Auxin responsive protein 60 144 IPR003676 GO:0009733
Vifa2g05087 162 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 60 142 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05087 Vifa-Chr2 1521648172 1521648660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05087 81 149 Calmodulin-binding Proteins AT3G43120 50.725 1.18e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05087 K14488 - zju:125423918 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05087 2 1521648172 1521648660 Vifa2g05087 2 1521648172 1521648660 ECH